When doing joint calling, merge subcommand only reports bounds with a minimum number of supporting reads in at least one sample (default: 6)
Introduces index subcommand to create an str index of the reference genome. This was previously done per sample, but is more efficient to do once in advance for larger cohorts
Minor:
Memory required for merge reduced by more than half
To Do:
Major:
mergesubcommand only reports bounds with a minimum number of supporting reads in at least one sample (default: 6)indexsubcommand to create an str index of the reference genome. This was previously done per sample, but is more efficient to do once in advance for larger cohortsMinor:
mergereduced by more than half