quinlan-lab / STRling

Detect novel (and reference) STR expansions from short-read data
MIT License
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Inconsistent soft-clipped reads may impact length estimates #93

Open hdashnow opened 3 years ago

hdashnow commented 3 years ago

Inconsistent soft-clipped reads are ignored when calculating bounds, see #90 However, they do still contribute to center mass and to allele length calculations. Keeping this here as a reminder in case this becomes an issue in the future.