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quinlan-lab / ccrhtml

A small repo for storing the code for making the files and html for CCRs.
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bigwig too? #11

Closed colindaven closed 6 years ago

colindaven commented 6 years ago

Hi,

thanks for this. Is the bigwig also available? It would be nicer and easier to put into a local JBrowse than putting in that huge BED file.

Thanks, Colin

arq5x commented 6 years ago

Hi colin, a link to the BW is available on the browser. I will also update the README to include this link.

jimhavrilla commented 6 years ago

There was always a bigwig link on the browser yes. But it should also be noted that for the case where two genes of different size, rare though it may be, overlap, the bigwig track really does nothing to describe what is going on there and merely summarizes it by its very nature.

On Mon, Dec 11, 2017 at 9:40 AM Aaron Quinlan notifications@github.com wrote:

Hi colin, a link to the BW is available on the browser. I will also update the README to include this link.

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-- Jim Havrilla PhD Candidate in Human Genetics, University of Utah Accelerated BS/MS in Biomedical Engineering, Drexel University '12, Concentration: Bioinformatics "Memory, comprehension, communication, motivation"