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quinlan-lab / pathoscore

pathoscore evaluates variant pathogenicity tools and scores.
MIT License
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better options for missing scores #1

Closed brentp closed 7 years ago

brentp commented 7 years ago

currently, in evaluate missing scores are essentially ignored. there should be a penalty for this. I think one option is to scale each value in the roc output by the percent of scored variants, so if only 20% of variants are scored, then the maximum ROC curve will be 0.8

brentp commented 7 years ago

this is resolved (as best as is reasonable) by the new plot that shows pct variants scored.

brentp commented 7 years ago

using this issue to attach images.

clinvar-o stats clinvar-o j clinvar-o roc