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quinlan-lab / pathoscore

pathoscore evaluates variant pathogenicity tools and scores.
MIT License
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code and documentation for AD gene set #7

Closed jimhavrilla closed 7 years ago

jimhavrilla commented 7 years ago

complement of ad gene set in bed format and genome space

brentp commented 7 years ago

can you add a README.md that briefly describes that dataset and how it was filtered?

is your python script necessary? or can you just use bedtools merge directly for the purpose of this dataset?

jimhavrilla commented 7 years ago

yes, the script is necessary if in the future we want to use gene specific filtering which we should because some genes overlap the same space and a variant should be specific to that. also i'm adding a README.md

brentp commented 7 years ago

can you make the PR without that script and just using bedtools merge. once we do the complement, the source gene is lost anyway.