fixed "impacts-field" argument call

quinlan-lab / vcf2db

create a gemini-compatible database from a VCF

MIT License

55 stars 13 forks source link

fixed "impacts-field" argument call #28

Closed matthdsm closed 7 years ago

matthdsm commented 7 years ago

Hi @brentp ,

I wanted to test the new functionality, but found a small typo ;)

Cheers, M

matthdsm commented 7 years ago

Sorry, it seems I was a bit too trigger happy on this. Anyways, I'm getting the following error:

$ vcf2db.py --impacts-field CADD_raw D1311329-vepeffects.vcf.gz D1311329.ped D1311329.db                                                                                                                                                                                                  
Traceback (most recent call last):
  File "/bcbio/anaconda/bin/vcf2db.py", line 846, in <module>
    impacts_extras=p.impacts_field)
AttributeError: 'ArgumentParser' object has no attribute 'impacts_field'

I'll look into fixing this. M