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quinngroup / ornet

Organellar segmentation, tracking, and network modeling.
MIT License
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Segmentation #8

Closed Adurden closed 4 years ago

Adurden commented 5 years ago

add code for segmentation process of cells

Adurden commented 5 years ago

Segmentation code has been added and cleaned up for PEP8 style as of this commit

Adurden commented 5 years ago

Some of the process could be cleaned up by breaking it into smaller units

Adurden commented 5 years ago

Also the extraction functionality needs to be added to extract_cells.py. Currently it only outputs the masks as npy files.