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qunfengdong / BLCA

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Use python 3 #11

Closed koopkaup closed 5 years ago

koopkaup commented 5 years ago

Some steps take enormously long time to run. Especially reading in blast output. Python version 3 has optimized dictionary and list functions, thus they run faster. I strongly suggest to update BLCA for python 3.

yingeddi2008 commented 5 years ago

Hi Kristjan,

Thanks for taking an interest in using our software.

And yes, you are right! We are in the process of improving our running speed, especially at the reading blastn output step. Your suggestion is highly appreciated.

Best,

Huaiying (Eddi) Lin

On Oct 24, 2018, at 04:35, Kristjan notifications@github.com wrote:

Some steps take enormously long time to run. Especially reading in blast output. Python version 3 has optimized dictionary and list functions, thus they run faster. I strongly suggest to update BLCA for python 3.

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