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qunfengdong / BLCA

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Number of threads error #26

Closed erin-d closed 3 years ago

erin-d commented 3 years ago

Hi,

I am trying to set up and use BLCA in a conda environment. I have blast, muscle, and clustalo installed through the bioconda channel.

python 1.subset_db_acc.py works, but when I run python 2.blca_main.py -i test.fasta I get the following error, FATAL: Cannot change number of threads to 2. Clustal Omega was build without OpenMP support.`

I cannot seem to resolve this error, do you have any suggestions to fix this error?

Thanks, Erin

Screen Shot 2021-05-13 at 1 42 29 PM

YJulyXing commented 3 years ago

Hello, Could you try add "-p 1" when you run python 2.blca_main.py and see what happens?

erin-d commented 3 years ago

This was successful, thank you!