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quocodile
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visualize-clonal-trees
code repository for group COMPs at Computer Science Department of Carleton College, MN, 2022 - 2023
MIT License
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Interactivity with the rectangles in heatmap?
#44
theatraw
opened
1 month ago
0
Make rescaling work
#43
theatraw
opened
6 months ago
0
Linked highlighting for top contributors upon hover
#42
theatraw
closed
6 months ago
0
"See more" option for top contributors
#41
theatraw
closed
1 month ago
0
Allow for single tree load
#40
theatraw
opened
7 months ago
0
Tripartite graph restructuring
#39
theatraw
closed
1 month ago
0
Table that contains all mutations and their contributions
#38
theatraw
opened
7 months ago
0
Add a legend for the zero contribution.
#37
quocodile
closed
1 month ago
0
Add a legend for distinct mutations.
#36
quocodile
closed
11 months ago
0
Add CASet/DISC heatmap.
#35
quocodile
opened
11 months ago
0
Add column and row labels to heatmap.
#34
quocodile
closed
7 months ago
0
Remove numbers for the legend.
#33
quocodile
closed
11 months ago
0
Enable the user to submit DOT trees.
#32
quocodile
closed
11 months ago
0
Add separate textures for t1 and t2 unique mutations.
#31
quocodile
closed
11 months ago
0
Provide feedback for user upon invalid format.
#30
quocodile
opened
12 months ago
0
Single column mutations for the venn diagram
#29
quocodile
closed
11 months ago
0
Add branding to the visual tool
#28
quocodile
opened
12 months ago
0
Add a description briefly discussing how each distance measure works in the main tool page.
#27
quocodile
opened
1 year ago
0
Create a modal for the user to manually edit a tree.
#26
quocodile
closed
11 months ago
0
Add an intersection/union option for the tripartite and heatmap
#25
quocodile
closed
1 year ago
1
Clicking on mutations isn't going to the database website
#24
theatraw
closed
1 year ago
1
NaNs in the color scale
#23
theatraw
closed
1 year ago
1
Have common parts of trees be constant across the two trees
#22
theatraw
opened
1 year ago
1
Automatically handle DOT & newick input without a button
#21
theatraw
closed
1 year ago
0
The visualization cannot display the entirety of a tree that branches out.
#20
quocodile
opened
1 year ago
0
Sometimes hovering a mutation in the trees does not work.
#19
quocodile
opened
1 year ago
1
Make it more clear that you need to click 'save' after you make a change.
#18
quocodile
closed
11 months ago
0
Implement branching factor for the summary statistics
#17
quocodile
closed
1 year ago
1
Normalize color gradient?
#16
theatraw
closed
11 months ago
1
Files are slow to open
#15
theatraw
closed
1 year ago
1
Improve instructions/overview for CASet and DISC
#14
theatraw
opened
1 year ago
0
Ancestor descendant calculation
#13
theatraw
closed
1 year ago
1
Add a tool tip that shows the expected input for Newick format
#12
quocodile
opened
1 year ago
0
Reset zoom & pan option
#11
theatraw
opened
1 year ago
0
Add a tool tip that shows the expected input for DOT format
#10
quocodile
opened
1 year ago
0
Linked highlighting on edges
#9
theatraw
opened
1 year ago
2
Distinct mutations label color
#8
theatraw
closed
11 months ago
2
Annotate the color legend to be more clear that it is representing max and min contribution for a single node
#7
quocodile
closed
11 months ago
1
Give 0 contribution its own color
#6
quocodile
closed
1 year ago
1
Top 5 contributors when there's a node with multiple mutations
#5
theatraw
closed
6 months ago
0
Add captions to figures in description page
#4
quocodile
opened
1 year ago
1
Fix buggy file upload
#3
quocodile
closed
1 year ago
1
Fix buggy on-hover event for single view
#2
quocodile
closed
1 year ago
1