RTs to .nii.gz conversion issue

qurit / rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

MIT License

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RTs to .nii.gz conversion issue #93

Open TmnGitHub opened 12 months ago

TmnGitHub commented 12 months ago

Hi all,

Rt-utils is an exceptional tool. However, I encountered an issue with the output of RTs ROI in a nii.gz file. There are some ROI regions that are cropped abnormally and others are fine, the image is attached.

I would greatly appreciate any assistance or guidance on resolving this issue. @carluri @asim-shrestha @awtkns @qurit-frizi

Best,

Screen Shot 2023-07-22 at 8 12 20 AM

plesqui commented 11 months ago

Hello @TmnGitHub,

Thank you for opening this issue. In order for us to reproduce and understand this issue, could you please provide us with:

The input image file
The input mask file
A sample of the code snippet that you're using to leverage rt-utils to generate the output roi, as well as the code to store such output for visualization.

Thank you!

Pedro