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quxiaojian / PGA

Plastid Genome Annotator
GNU General Public License v3.0
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question about PGA usage #3

Closed xiongqian123456789 closed 4 years ago

xiongqian123456789 commented 4 years ago

DESCRIPTION Application to create BLAST databases, version 2.2.31+

Use '-help' to print detailed descriptions of command line arguments

Error: Unknown argument: "blastdb_version" BLAST Database error: No alias or index file found for nucleotide database [/home/u4244/choloraplast/test/BN3.chlor.target] in search path [/home/u4244/choloraplast::] BLAST Database error: No alias or index file found for nucleotide database [/home/u4244/choloraplast/test/BN3.chlor.target] in search path [/home/u4244/choloraplast::] BLAST Database error: No alias or index file found for nucleotide database [/home/u4244/choloraplast/test/BN3.chlor.target] in search path [/home/u4244/choloraplast::] BLAST Database error: No alias or index file found for nucleotide database [/home/u4244/choloraplast/test/BN3.chlor.target] in search path [/home/u4244/choloraplast::] Error: Unknown argument: "blastdb_version" BLAST Database error: No alias or index file found for nucleotide database [fasta_temp] in search path [/home/u4244/choloraplast::]

quxiaojian commented 4 years ago

Please reinstall your local blast to latest version (blast 2.10.0), and 2.5.0+ or higher is also ok, but blast 2.2.31+ is a little old. Then make sure that blast is in your environmental path. You can check blast version by inputing "blastn -version". Hope it can help.

quxiaojian commented 4 years ago

Latest blastn has updated default value for one parameter, we have made adjustation.