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qxcv / asnets

Source for Action Schema Networks paper (AAAI'18)
https://arxiv.org/abs/1709.04271
MIT License
29 stars 11 forks source link

Error #2

Closed afifatariq closed 4 years ago

afifatariq commented 4 years ago

When running docker build on the DOCKERFILE, I end up getting this error:

ERROR: Command errored out with exit status 1:
 command: /home/asnets/venv-asnets/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/asnets/asnets/setup.py'"'"'; __file__='"'"'/home/asnets/asnets/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' develop --no-deps
     cwd: /home/asnets/asnets/
Complete output (242 lines):
running develop
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -march=native -Ofast -I/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include -D_GLIBCXX_USE_CXX11_ABI=1 -g -I/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include -c asnets/ops/_asnet_ops_impl.cc -o asnets/ops/_asnet_ops_impl.o
In file included from /home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/unsupported/Eigen/CXX11/Tensor:140,
                 from /home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/third_party/eigen3/unsupported/Eigen/CXX11/Tensor:1,
                 from /home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/tensorflow/core/framework/numeric_types.h:20,
                 from /home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/tensorflow/core/framework/allocator.h:23,
                 from /home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/tensorflow/core/framework/op_kernel.h:23,
                 from asnets/ops/_asnet_ops_impl.cc:1:
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h: In member function ‘void Eigen::TensorEvaluator<const Eigen::TensorChippingOp<DimId, XprType>, Device>::block(Eigen::TensorEvaluator<const Eigen::TensorChippingOp<DimId, XprType>, Device>::OutputTensorBlock*) const [with long int DimId = -1; ArgType = const Eigen::TensorChippingOp<-1, const Eigen::TensorMap<Eigen::Tensor<const float, 3, 1, long int>, 16, Eigen::MakePointer> >; Device = Eigen::DefaultDevice]’:
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h:317:9: warning: ‘*((void*)(& input_block)+8)[18446744073709551615]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  317 |         input_block_sizes[i] = output_block_sizes[i - 1];
      |         ^~~~~~~~~~~~~~~~~
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h: In member function ‘void Eigen::TensorEvaluator<const Eigen::TensorCwiseBinaryOp<BinaryOp, LeftArgType, RightArgType>, Device>::block(Eigen::TensorEvaluator<const Eigen::TensorCwiseBinaryOp<BinaryOp, LeftArgType, RightArgType>, Device>::TensorBlock*) const [with BinaryOp = Eigen::internal::scalar_sum_op<float, float>; LeftArgType = const Eigen::TensorChippingOp<-1, Eigen::TensorChippingOp<-1, Eigen::TensorMap<Eigen::Tensor<float, 3, 1, long int>, 16, Eigen::MakePointer> > >; RightArgType = const Eigen::TensorSlicingOp<const std::array<long long int, 1>, const std::array<long long int, 1>, const Eigen::TensorChippingOp<0, const Eigen::TensorChippingOp<0, const Eigen::TensorMap<Eigen::Tensor<const float, 3, 1, long int>, 16, Eigen::MakePointer> > > >; Device = Eigen::DefaultDevice]’:
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/include/unsupported/Eigen/CXX11/src/Tensor/TensorChipping.h:317:9: warning: ‘*((void*)(& input_block)+8)[18446744073709551615]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  317 |         input_block_sizes[i] = output_block_sizes[i - 1];
      |         ^~~~~~~~~~~~~~~~~
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g asnets/ops/_asnet_ops_impl.o -o asnets/ops/_asnet_ops_impl.so -std=c++11 -march=native -Ofast -lstdc++ -Wl,--no-undefined -L/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow -ltensorflow_framework
running egg_info
creating asnets.egg-info
writing asnets.egg-info/PKG-INFO
writing dependency_links to asnets.egg-info/dependency_links.txt
writing requirements to asnets.egg-info/requires.txt
writing top-level names to asnets.egg-info/top_level.txt
writing manifest file 'asnets.egg-info/SOURCES.txt'
reading manifest file 'asnets.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'asnets.egg-info/SOURCES.txt'
running build_ext
Creating /home/asnets/venv-asnets/lib/python3.7/site-packages/asnets.egg-link (link to .)
Adding asnets 0.0.1 to easy-install.pth file

Installed /home/asnets/asnets
requesting all changes
adding changesets
adding manifests
adding file changes
added 13771 changesets with 40247 changes to 9187 files (+4 heads)
new changesets 875fe8fa322a:50e4b39850c3
updating to branch release-19.06
1467 files updated, 0 files merged, 0 files removed, 0 files unresolved
-- The C compiler identification is GNU 9.2.1
-- The CXX compiler identification is GNU 9.2.1
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Building for 64-bit.
-- Performing Test CXX11_FOUND
-- Performing Test CXX11_FOUND - Success
-- Enabling plugin causal_graph because plugin core_sources is enabled and depends on it.
-- Enabling plugin int_hash_set because plugin core_sources is enabled and depends on it.
-- Enabling plugin int_packer because plugin core_sources is enabled and depends on it.
-- Enabling plugin ordered_set because plugin core_sources is enabled and depends on it.
-- Enabling plugin segmented_vector because plugin core_sources is enabled and depends on it.
-- Enabling plugin subscriber because plugin core_sources is enabled and depends on it.
-- Enabling plugin successor_generator because plugin core_sources is enabled and depends on it.
-- Enabling plugin task_properties because plugin core_sources is enabled and depends on it.
-- Enabling plugin combining_evaluator because plugin max_evaluator is enabled and depends on it.
-- Enabling plugin stubborn_sets because plugin stubborn_sets_simple is enabled and depends on it.
-- Enabling plugin eager_search because plugin plugin_astar is enabled and depends on it.
-- Enabling plugin search_common because plugin plugin_astar is enabled and depends on it.
-- Enabling plugin lazy_search because plugin plugin_lazy is enabled and depends on it.
-- Enabling plugin priority_queues because plugin additive_heuristic is enabled and depends on it.
-- Enabling plugin relaxation_heuristic because plugin additive_heuristic is enabled and depends on it.
-- Enabling plugin domain_transition_graph because plugin context_enhanced_additive_heuristic is enabled and depends on it.
-- Enabling plugin dynamic_bitset because plugin cegar is enabled and depends on it.
-- Enabling plugin extra_tasks because plugin cegar is enabled and depends on it.
-- Enabling plugin equivalence_relation because plugin mas_heuristic is enabled and depends on it.
-- Enabling plugin sccs because plugin mas_heuristic is enabled and depends on it.
-- Enabling plugin variable_order_finder because plugin mas_heuristic is enabled and depends on it.
-- Enabling plugin lp_solver because plugin landmarks is enabled and depends on it.
-- Enabling plugin max_cliques because plugin pdbs is enabled and depends on it.
-- Enabling plugin sampling because plugin pdbs is enabled and depends on it.
-- Enabling plugin null_pruning_method because plugin eager_search is enabled and depends on it.
-- Using plugin: core_sources
-- Using plugin: options
-- Using plugin: utils
-- Using plugin: alternation_open_list
-- Using plugin: best_first_open_list
-- Using plugin: epsilon_greedy_open_list
-- Using plugin: pareto_open_list
-- Using plugin: tiebreaking_open_list
-- Using plugin: type_based_open_list
-- Using plugin: dynamic_bitset
-- Using plugin: equivalence_relation
-- Using plugin: int_hash_set
-- Using plugin: int_packer
-- Using plugin: max_cliques
-- Using plugin: priority_queues
-- Using plugin: ordered_set
-- Using plugin: segmented_vector
-- Using plugin: subscriber
-- Using plugin: evaluators_plugin_group
-- Using plugin: const_evaluator
-- Using plugin: g_evaluator
-- Using plugin: combining_evaluator
-- Using plugin: max_evaluator
-- Using plugin: pref_evaluator
-- Using plugin: weighted_evaluator
-- Using plugin: sum_evaluator
-- Using plugin: null_pruning_method
-- Using plugin: stubborn_sets
-- Using plugin: stubborn_sets_simple
-- Using plugin: stubborn_sets_ec
-- Using plugin: search_common
-- Using plugin: eager_search
-- Using plugin: plugin_astar
-- Using plugin: plugin_eager
-- Using plugin: plugin_eager_greedy
-- Using plugin: plugin_eager_wastar
-- Using plugin: plugin_lazy
-- Using plugin: plugin_lazy_greedy
-- Using plugin: plugin_lazy_wastar
-- Using plugin: enforced_hill_climbing_search
-- Using plugin: iterated_search
-- Using plugin: lazy_search
-- Using plugin: lp_solver
-- Using plugin: relaxation_heuristic
-- Using plugin: additive_heuristic
-- Using plugin: blind_search_heuristic
-- Using plugin: context_enhanced_additive_heuristic
-- Using plugin: cg_heuristic
-- Using plugin: domain_transition_graph
-- Using plugin: ff_heuristic
-- Using plugin: goal_count_heuristic
-- Using plugin: hm_heuristic
-- Using plugin: landmark_cut_heuristic
-- Using plugin: max_heuristic
-- Using plugin: core_tasks
-- Using plugin: extra_tasks
-- Using plugin: causal_graph
-- Using plugin: sampling
-- Using plugin: successor_generator
-- Using plugin: task_properties
-- Using plugin: variable_order_finder
-- Using plugin: cegar
-- Using plugin: mas_heuristic
-- Using plugin: landmarks
-- Using plugin: operator_counting
-- Using plugin: pdbs
-- Using plugin: potentials
-- Using plugin: sccs
-- Could NOT find OSI (missing: OSI_INCLUDE_DIRS OSI_LIBRARIES)
-- Configuring done
-- Generating done
-- Build files have been written to: /home/asnets/asnets/fd/builds/release
Scanning dependencies of target translate
Copying translator module into output directory
[  0%] Built target translate
Scanning dependencies of target downward
[  0%] Building CXX object search/CMakeFiles/downward.dir/algorithms/sccs.cc.o
[  0%] Building CXX object search/CMakeFiles/downward.dir/potentials/util.cc.o
[  1%] Building CXX object search/CMakeFiles/downward.dir/potentials/potential_optimizer.cc.o
[  1%] Building CXX object search/CMakeFiles/downward.dir/potentials/sample_based_potential_heuristics.cc.o
[  2%] Building CXX object search/CMakeFiles/downward.dir/potentials/single_potential_heuristics.cc.o
[  2%] Building CXX object search/CMakeFiles/downward.dir/potentials/potential_max_heuristic.cc.o
[  3%] Building CXX object search/CMakeFiles/downward.dir/potentials/potential_heuristic.cc.o
[  3%] Building CXX object search/CMakeFiles/downward.dir/potentials/potential_function.cc.o
[  3%] Building CXX object search/CMakeFiles/downward.dir/potentials/diverse_potential_heuristics.cc.o
[  4%] Building CXX object search/CMakeFiles/downward.dir/potentials/plugin_group.cc.o
[  5%] Building CXX object search/CMakeFiles/downward.dir/pdbs/zero_one_pdbs_heuristic.cc.o
[  5%] Building CXX object search/CMakeFiles/downward.dir/pdbs/zero_one_pdbs.cc.o
[  6%] Building CXX object search/CMakeFiles/downward.dir/pdbs/validation.cc.o
[  6%] Building CXX object search/CMakeFiles/downward.dir/pdbs/utils.cc.o
[  7%] Building CXX object search/CMakeFiles/downward.dir/pdbs/plugin_group.cc.o
[  7%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pdb_heuristic.cc.o
[  8%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_information.cc.o
[  8%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_generator.cc.o
[  9%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_generator_manual.cc.o
[  9%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_generator_greedy.cc.o
[ 10%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_database.cc.o
[ 10%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_collection_generator_systematic.cc.o
[ 10%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_collection_generator_manual.cc.o
[ 11%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_collection_generator_hillclimbing.cc.o
[ 11%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_collection_generator_genetic.cc.o
[ 12%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_collection_generator_combo.cc.o
[ 12%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_collection_information.cc.o
[ 13%] Building CXX object search/CMakeFiles/downward.dir/pdbs/pattern_cliques.cc.o
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[2]: *** [search/CMakeFiles/downward.dir/build.make:180: search/CMakeFiles/downward.dir/potentials/diverse_potential_heuristics.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
g++: fatal error: Killed signal terminated program cc1plus
compilation terminated.
make[2]: *** [search/CMakeFiles/downward.dir/build.make:102: search/CMakeFiles/downward.dir/potentials/sample_based_potential_heuristics.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:128: search/CMakeFiles/downward.dir/all] Error 2
make: *** [Makefile:84: all] Error 2
Building configuration release.
Executing command "cmake -G Unix Makefiles -DCMAKE_BUILD_TYPE=Release ../../src" in directory "builds/release".
Executing command "make -j2 -j16" in directory "builds/release".
Traceback (most recent call last):
  File "build.py", line 153, in <module>
    main()
  File "build.py", line 149, in main
    build(config_name, CONFIGS[config_name], make_parameters)
  File "build.py", line 126, in build
    try_run([MAKE] + make_parameters, cwd=build_path)
  File "build.py", line 102, in try_run
    subprocess.check_call(cmd, cwd=cwd)
  File "/usr/lib/python3.7/subprocess.py", line 363, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['make', '-j2', '-j16']' returned non-zero exit status 2.
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:526: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  _np_qint8 = np.dtype([("qint8", np.int8, 1)])
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:527: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  _np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:528: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  _np_qint16 = np.dtype([("qint16", np.int16, 1)])
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:529: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  _np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:530: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  _np_qint32 = np.dtype([("qint32", np.int32, 1)])
/home/asnets/venv-asnets/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:535: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
  np_resource = np.dtype([("resource", np.ubyte, 1)])
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/asnets/asnets/setup.py", line 133, in <module>
    'build_py': build_py_and_ext,
  File "/home/asnets/venv-asnets/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup
    return distutils.core.setup(**attrs)
  File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/home/asnets/asnets/setup.py", line 61, in run
    try_install_fd()
  File "/home/asnets/asnets/asnets/fd_interface.py", line 54, in try_install_fd
    cwd=FD_DIR)
  File "/usr/lib/python3.7/subprocess.py", line 512, in run
    output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['python', 'build.py', '-j16']' returned non-zero exit status 1.
Installing FD
----------------------------------------

ERROR: Command errored out with exit status 1: /home/asnets/venv-asnets/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/asnets/asnets/setup.py'"'"'; file='"'"'/home/asnets/asnets/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' develop --no-deps Check the logs for full command output. The command '/bin/sh -c . ${HOME}/venv-asnets/bin/activate && echo . ${HOME}/venv-asnets/bin/activate >> ${HOME}/.bashrc && pip3 install --upgrade pip && pip3 install -e ${HOME}/asnets/' returned a non-zero code: 1

qxcv commented 4 years ago

The error line seems to be g++: fatal error: Killed signal terminated program cc1plus. Usually that happens when your machine runs out of memory & the OOM killer kills the process. Is that the case here?

afifatariq commented 4 years ago

I have fixed the problem. The error was actually in installing Fast Downward. I have downloaded fast-downward manually and then run the program and it has worked now.