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r-bioinformatics
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edgePy
A Python implementation of edgeR for differential expression analysis
https://edgepy.readthedocs.io
MIT License
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Wrong license in `setup.py`
#32
clintval
closed
6 years ago
5
NumPy should be explicitly installed
#31
clintval
closed
6 years ago
1
Added Sphinx integration, built initial files
#30
julianstanley
closed
6 years ago
5
Port front-end of CI and the four static code checking tools to a Tox wrapper
#29
clintval
closed
6 years ago
2
Reorganization to keep the root of this project cleaner
#28
clintval
closed
6 years ago
1
Addressing issue #25
#27
vzg100
closed
6 years ago
1
Setting up Sphinx and readthedocs
#26
julianstanley
closed
6 years ago
3
Nitpick: setting the wrong type should be a TypeError
#25
clintval
closed
6 years ago
2
Added flake8 support and ensure all tests pass
#24
clintval
closed
6 years ago
4
Implementation of method `cpm()` and corresponding tests
#23
clintval
closed
6 years ago
5
Revert "Draft at adding normalization methods to class"
#22
vzg100
closed
6 years ago
1
Converted to MIT License
#21
julianstanley
closed
6 years ago
1
Should we use a more permissive open source license?
#20
clintval
closed
6 years ago
3
Move to pytest from nose and add mypy
#19
clintval
closed
6 years ago
2
Draft at adding normalization methods to class
#18
paularstrpo
closed
6 years ago
5
Make normalization available to package import
#17
clintval
closed
6 years ago
2
Data Formats documentation guide
#16
clintval
opened
6 years ago
5
Base DGEList implementation
#15
clintval
closed
6 years ago
1
DGEList class with simple attr validation and data reading from open handles.
#14
clintval
closed
6 years ago
1
WIP: Implementing the primary DGEList class
#13
clintval
closed
6 years ago
4
Pathway Analysis
#12
eegk
closed
6 years ago
5
gene IDs - database support
#11
paularstrpo
closed
6 years ago
5
design testing procedures
#10
paularstrpo
opened
6 years ago
1
data normalization functions
#9
paularstrpo
opened
6 years ago
0
DGElist class implementation
#8
paularstrpo
closed
6 years ago
3
list of statistical tests
#7
paularstrpo
closed
6 years ago
2
Added edgeR at v3.21.10
#6
clintval
closed
6 years ago
1
Initial commit main program
#5
apfejes
closed
6 years ago
3
creating a data structure.
#4
apfejes
closed
6 years ago
2
WIP: script to merge files from htseq counts
#3
sridhar0605
closed
6 years ago
4
CI/cov. framework, installer, pkgd data, contributing.md
#2
clintval
closed
6 years ago
4
Port limma and edgeR
#1
clintval
opened
6 years ago
2
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