jags does not appear to be installed on Fedora Linux, R-devel, clang, gfortran

[cschwarz-stat-sfu-ca]

Doing a package check using devtools;:check_rhub()

Fedora Linux, R-devel, clang, gfortran fails with message ...

ERROR: dependency ‘R2jags’ is not available for package ‘BTSPAS’

• removing ‘/home/docker/R/BTSPAS’ Warning messages: 1: In i.p(...) : installation of package ‘rjags’ had non-zero exit status 2: In i.p(...) : installation of package ‘R2jags’ had non-zero exit status 3: In i.p(...) : installation of package ‘/tmp/Rtmpn5SWFU/file12f62f21e46/BTSPAS_2024.4.1.tar.gz’ had non-zero exit status

• installing source package ‘rjags’ ... package ‘rjags’ successfully unpacked and MD5 sums checked using staged installation checking for pkg-config... /usr/bin/pkg-config configure: WARNING: pkg-config file for jags 4 unavailable configure: WARNING: Consider adding the directory containing jags.pc configure: WARNING: to the PKG_CONFIG_PATH environment variable configure: Attempting legacy configuration of rjags checking for jags... no configure: error: "automatic detection of JAGS failed. Please use pkg-config to locate the JAGS library. See the INSTALL file for details." ERROR: configuration failed for package ‘rjags’

• removing ‘/home/docker/R/rjags’

See https://builder.r-hub.io/status/original/BTSPAS_2024.4.1.tar.gz-ed4a5d245f014c3895b10f4cd13d79d5

Thanks Carl Schwarz

[gaborcsardi]

System dependencies are installed as needed, you need to declare them in the SystemRequirements field of your package.

That said, I suggest you try https://github.com/r-hub/rhub2 instead.

[cschwarz-stat-sfu-ca]

Thanks for your reply, but mmm..the Description file does contain the following line

SystemRequirements: JAGS

So not clear why it cannot find it?

Carl

On Thu, Mar 14, 2024 at 12:46 AM Gábor Csárdi @.***> wrote:

System dependencies are installed as needed, you need to declare them in the SystemRequirements field of your package.

That said, I suggest you try https://github.com/r-hub/rhub2 instead.

— Reply to this email directly, view it on GitHub https://github.com/r-hub/rhub/issues/578#issuecomment-1996756249, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABXIXRQXM4VM7HW4U4CS7SLYYFIVNAVCNFSM6AAAAABEVNQIGKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSOJWG42TMMRUHE . You are receiving this because you authored the thread.Message ID: @.***>

[gaborcsardi]

This issue is about the previous R-hub system, it does not apply to the new system, so I am closing it now. Please see https://r-hub.github.io/rhub/ for the new system, R-hub v2.