cran compared to r-hub solaris

[jwijffels]

Hello,

I just uploaded an new version of udpipe to cran in order to fix a solaris issue of that package. I tested the package with r-hub as in check(platform = "solaris-x86-patched")

The results from the check are different from the check at CRAN though. At cran I get: https://www.r-project.org/nosvn/R.check/r-patched-solaris-x86/udpipe-00install.html

* installing to library ‘/home/ripley/R/Lib32’
* installing *source* package ‘udpipe’ ...
** package ‘udpipe’ successfully unpacked and MD5 sums checked
** libs
/opt/csw//bin/g++ -std=gnu++11 -I/home/ripley/R/gcc/include -DNDEBUG  -I"/home/ripley/R/Lib32/Rcpp/include" -I/opt/csw/include -I/usr/local/include   -fPIC  -O2 -c RcppExports.cpp -o RcppExports.o
/opt/csw//bin/g++ -std=gnu++11 -I/home/ripley/R/gcc/include -DNDEBUG  -I"/home/ripley/R/Lib32/Rcpp/include" -I/opt/csw/include -I/usr/local/include   -fPIC  -O2 -c rcpp_udpipe.cpp -o rcpp_udpipe.o
/opt/csw//bin/g++ -std=gnu++11 -I/home/ripley/R/gcc/include -DNDEBUG  -I"/home/ripley/R/Lib32/Rcpp/include" -I/opt/csw/include -I/usr/local/include   -fPIC  -O2 -c udpipe.cpp -o udpipe.o
udpipe.cpp: In member function ‘void ufal::udpipe::multiword_splitter::append_token(ufal::udpipe::utils::string_piece, ufal::udpipe::utils::string_piece, ufal::udpipe::sentence&) const’:
udpipe.cpp:19769:3: error: expected primary-expression before ‘enum’
   enum { UC_FIRST, UC_ALL, OTHER }; 
   ^
udpipe.cpp:19770:16: error: ‘OTHER’ was not declared in this scope
   int casing = OTHER;
                ^
*** Error code 1
make: Fatal error: Command failed for target `udpipe.o'
Current working directory /tmp/RtmpMsaaPw/R.INSTALL2d4831022956/udpipe/src
ERROR: compilation failed for package ‘udpipe’
* removing ‘/home/ripley/R/Lib32/udpipe’

Using r-hub I get https://builder.r-hub.io/status/original/udpipe_0.1.1.tar.gz-44d422922856468e91a3a2b35eadf090

** libs
/opt/csw/bin/g++ -std=gnu++11 -I/opt/R/R-3.4.1-patched-gcc/lib/R/include -DNDEBUG  -I"/export/home/XuDctrs/R/Rcpp/include" -I/opt/csw/include -I/usr/local/include   -fPIC  -O2 -c RcppExports.cpp -o RcppExports.o
In file included from /opt/csw/include/c++/5.2.0/cmath:44:0,
                 from /export/home/XuDctrs/R/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /export/home/XuDctrs/R/Rcpp/include/Rcpp/r/headers.h:48,
                 from /export/home/XuDctrs/R/Rcpp/include/RcppCommon.h:29,
                 from /export/home/XuDctrs/R/Rcpp/include/Rcpp.h:27,
                 from RcppExports.cpp:4:
/usr/include/math.h:45:12: error: ‘std::float_t’ has not been declared
 using std::float_t;
            ^
/usr/include/math.h:46:12: error: ‘std::double_t’ has not been declared
 using std::double_t;
            ^
/usr/include/math.h:48:12: error: ‘std::fpclassify’ has not been declared
 using std::fpclassify;
            ^
/usr/include/math.h:49:12: error: ‘std::isfinite’ has not been declared
 using std::isfinite;
            ^
/usr/include/math.h:50:12: error: ‘std::isinf’ has not been declared
 using std::isinf;
            ^
/usr/include/math.h:51:12: error: ‘std::isnan’ has not been declared
 using std::isnan;
            ^
/usr/include/math.h:52:12: error: ‘std::isnormal’ has not been declared
 using std::isnormal;
            ^
/usr/include/math.h:53:12: error: ‘std::signbit’ has not been declared
 using std::signbit;
            ^
/usr/include/math.h:55:12: error: ‘std::isgreater’ has not been declared
 using std::isgreater;
            ^
/usr/include/math.h:56:12: error: ‘std::isgreaterequal’ has not been declared
 using std::isgreaterequal;
            ^
/usr/include/math.h:57:12: error: ‘std::isless’ has not been declared
 using std::isless;
            ^
/usr/include/math.h:58:12: error: ‘std::islessequal’ has not been declared
 using std::islessequal;
            ^
/usr/include/math.h:59:12: error: ‘std::islessgreater’ has not been declared
 using std::islessgreater;
            ^
/usr/include/math.h:60:12: error: ‘std::isunordered’ has not been declared
 using std::isunordered;
            ^
/usr/include/math.h:62:12: error: ‘std::acosh’ has not been declared
 using std::acosh;
            ^
/usr/include/math.h:63:12: error: ‘std::asinh’ has not been declared
 using std::asinh;
            ^
/usr/include/math.h:64:12: error: ‘std::atanh’ has not been declared
 using std::atanh;
            ^
/usr/include/math.h:65:12: error: ‘std::cbrt’ has not been declared
 using std::cbrt;
            ^
/usr/include/math.h:66:12: error: ‘std::copysign’ has not been declared
 using std::copysign;
            ^
/usr/include/math.h:67:12: error: ‘std::erf’ has not been declared
 using std::erf;
            ^
/usr/include/math.h:68:12: error: ‘std::erfc’ has not been declared
 using std::erfc;
            ^
/usr/include/math.h:69:12: error: ‘std::exp2’ has not been declared
 using std::exp2;
            ^
/usr/include/math.h:70:12: error: ‘std::expm1’ has not been declared
 using std::expm1;
            ^
/usr/include/math.h:71:12: error: ‘std::fdim’ has not been declared
 using std::fdim;
            ^
/usr/include/math.h:72:12: error: ‘std::fma’ has not been declared
 using std::fma;
            ^
/usr/include/math.h:73:12: error: ‘std::fmax’ has not been declared
 using std::fmax;
            ^
/usr/include/math.h:74:12: error: ‘std::fmin’ has not been declared
 using std::fmin;
            ^
/usr/include/math.h:75:12: error: ‘std::hypot’ has not been declared
 using std::hypot;
            ^
/usr/include/math.h:76:12: error: ‘std::ilogb’ has not been declared
 using std::ilogb;
            ^
/usr/include/math.h:77:12: error: ‘std::lgamma’ has not been declared
 using std::lgamma;
            ^
/usr/include/math.h:78:12: error: ‘std::llrint’ has not been declared
 using std::llrint;
            ^
/usr/include/math.h:79:12: error: ‘std::llround’ has not been declared
 using std::llround;
            ^
/usr/include/math.h:80:12: error: ‘std::log1p’ has not been declared
 using std::log1p;
            ^
/usr/include/math.h:81:12: error: ‘std::log2’ has not been declared
 using std::log2;
            ^
/usr/include/math.h:82:12: error: ‘std::logb’ has not been declared
 using std::logb;
            ^
/usr/include/math.h:83:12: error: ‘std::lrint’ has not been declared
 using std::lrint;
            ^
/usr/include/math.h:84:12: error: ‘std::lround’ has not been declared
 using std::lround;
            ^
/usr/include/math.h:85:12: error: ‘std::nan’ has not been declared
 using std::nan;
            ^
/usr/include/math.h:86:12: error: ‘std::nanf’ has not been declared
 using std::nanf;
            ^
/usr/include/math.h:87:12: error: ‘std::nanl’ has not been declared
 using std::nanl;
            ^
/usr/include/math.h:88:12: error: ‘std::nearbyint’ has not been declared
 using std::nearbyint;
            ^
/usr/include/math.h:89:12: error: ‘std::nextafter’ has not been declared
 using std::nextafter;
            ^
/usr/include/math.h:90:12: error: ‘std::nexttoward’ has not been declared
 using std::nexttoward;
            ^
/usr/include/math.h:91:12: error: ‘std::remainder’ has not been declared
 using std::remainder;
            ^
/usr/include/math.h:92:12: error: ‘std::remquo’ has not been declared
 using std::remquo;
            ^
/usr/include/math.h:93:12: error: ‘std::rint’ has not been declared
 using std::rint;
            ^
/usr/include/math.h:94:12: error: ‘std::round’ has not been declared
 using std::round;
            ^
/usr/include/math.h:95:12: error: ‘std::scalbln’ has not been declared
 using std::scalbln;
            ^
/usr/include/math.h:96:12: error: ‘std::scalbn’ has not been declared
 using std::scalbn;
            ^
/usr/include/math.h:97:12: error: ‘std::tgamma’ has not been declared
 using std::tgamma;
            ^
/usr/include/math.h:98:12: error: ‘std::trunc’ has not been declared
 using std::trunc;
            ^
gmake: *** [/opt/R/R-3.4.1-patched-gcc/lib/R/etc/Makeconf:168: RcppExports.o] Error 1
ERROR: compilation failed for package ‘udpipe’

Any idea on what is the reason of that and if it can be fixed, the package is available at https://github.com/bnosac/udpipe/releases/tag/0.1.1

[jwijffels]

Hello Julie,

Thanks for picking up this. I would like to see why there is indeed a mismatch between the Solaris environment on r-hub and the one on CRAN.

best, Jan

On 26 November 2017 at 01:08, Julie Tibshirani notifications@github.com wrote:

Looking at the specs for the CRAN Solaris machines ( https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-patched-solaris-x86), it seems they use Oracle Developer Studio 12.5's C++ compiler, version 5.14. The error above suggests that the r-hub builder may be using a different compiler version ('In file included from /opt/csw/include/c++/5.2.0/ cmath:44:0...')

@gaborcsardi https://github.com/gaborcsardi could a compiler mismatch be causing this discrepancy, and if so, could the r-hub compiler be updated to match the version used for CRAN? Thanks in advance!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/r-hub/solarischeck/issues/5#issuecomment-346974648, or mute the thread https://github.com/notifications/unsubscribe-auth/ABoa2nC_GYo6N4t3DWe6fKTSq8O8f2Myks5s6KwOgaJpZM4PYAiz .

[gaborcsardi]

Both CRAN and rhub use the same g++ version.

[jwijffels]

any other suggestion what could have caused this difference?