r-lib / pak

A fresh approach to package installation
https://pak.r-lib.org
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Support GITLAB_PAT #588

Open rorynolan opened 5 months ago

rorynolan commented 5 months ago

Could you please support GITLAB_PAT the same way you support GITHUB_PAT? The remotes package supports both. pak is so much faster that right now my workaround is to first clone the gitlab repo and then do a pak::local_install(). I'm happy to have a crack at a PR if you give me some instruction, but also happy for you do do it yourself.

Thank you for pak, I use it all the time.

gaborcsardi commented 5 months ago

This is already possible, see the gitcreds package for the env var you need to define for your host. E.g. for gitlab.org:

❯ gitcreds::gitcreds_cache_envvar("https://gitlab.org")
[1] "GITHUB_PAT_GITLAB_ORG"

So GITHUB_PAT_GITLAB_ORG should work, let me know if it doesn't because I can't try it now.

We should document this better.

rorynolan commented 5 months ago

Thanks for the fast response. Would you be interested in a docs-only PR to mention this?

gaborcsardi commented 5 months ago

Does it actually work? :D

rorynolan commented 5 months ago

It does :-)

gaborcsardi commented 5 months ago

Yeah, in that case a PR is welcome. I'll probably also add a function to pak to call gitcreds internally. We should probably also support GIT_TOKEN_*, e.g. GIT_TOKEN_GITLAB_ORG, the current scheme is weird for other sites.

rorynolan commented 5 months ago

The GIT_TOKEN_* makes sense to me. Do you want to implement that before I make my PR? Also, would gitcreds be used only if available? I see it's only in pak Suggests.

gaborcsardi commented 5 months ago

No, I can do that later, or I can add it to the PR. gitcreds is already included in pak: https://github.com/r-lib/pak/blob/main/src/library/pkgdepends/R/git-auth.R

ALanguillaume commented 3 months ago

Dear @gaborcsardi

The method describe here to install packages from private gitlab.com/org repositories does not seem to work for private gitlab instances. See reprex anonymized below

gitcreds::gitcreds_cache_envvar("https://boulangerie.thinkr.fr")
#> [1] "GITHUB_PAT_BOULANGERIE_THINKR_FR"
Sys.setenv(
  "GITHUB_PAT_BOULANGERIE_THINKR_FR" = "lefrenchmotdepasseverysecret"
)
pak::pkg_install("git::https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage")
#> Error: ! error in pak subprocess
#> Caused by error: 
#> ! Could not solve package dependencies:
#> * git::https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage: ! pkgdepends resolution error for
#> git::https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage.
#> Caused by error: 
#> ! Failed to download 'DESCRIPTION' from git repo at
#> <https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage>.
#> Caused by error in `stop(http_error(resp))`:
#> ! Unauthorized (HTTP 401).

pd <- pkgdepends::new_pkg_deps("git::https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage")
pd$solve()
pd$draw()
#> Error: ! Could not solve package dependencies:
#> * git::https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage: ! pkgdepends resolution error for
#> git::https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage.
#> Caused by error: 
#> ! Failed to download 'DESCRIPTION' from git repo at
#> <https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage>.
#> Caused by error in `stop(http_error(resp))`:
#> ! Unprocessable Entity (WebDAV; RFC 4918) (HTTP 422).

# Control with remotes to make sur the TOKEN is valid
options(
  remotes.git_credentials = git2r::cred_user_pass(
    username = "gitlab-ci-token", 
    password = Sys.getenv("GITHUB_PAT_boulangerie_THINKR_FR")
  )
)
remotes::install_git("https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage")
#> Downloading git repo https://boulangerie.thinkr.fr/mygroup/mysubgroup/mypackage
#> Registered S3 methods overwritten by 'callr':
#>   method                    from
#>   format.callr_status_error     
#>   print.callr_status_error
#> ── R CMD build ─────────────────────────────────────────────────────────────────
#> * checking for file ‘/tmp/RtmpkTHZEZ/file7cca331d9c4/DESCRIPTION’ ... OK
#> * preparing ‘mypackage’:
#> * checking DESCRIPTION meta-information ... OK
#> * checking for LF line-endings in source and make files and shell scripts
#> * checking for empty or unneeded directories
#> * building ‘mypackage_0.0.1.tar.gz’
#> Installing package into '/home/bob/R/x86_64-pc-linux-gnu-library/4.3'
#> (as 'lib' is unspecified)

Created on 2024-03-13 with reprex v2.1.0

Session info ``` r sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.3.2 (2023-10-31) #> os Pop!_OS 22.04 LTS #> system x86_64, linux-gnu #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz Europe/Amsterdam #> date 2024-03-13 #> pandoc 3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date (UTC) lib source #> callr 3.7.5 2024-02-19 [1] CRAN (R 4.3.2) #> cli 3.6.2 2023-12-11 [1] CRAN (R 4.3.2) #> curl 5.2.1 2024-03-01 [1] CRAN (R 4.3.2) #> desc 1.4.3 2023-12-10 [1] CRAN (R 4.3.2) #> digest 0.6.35 2024-03-11 [1] CRAN (R 4.3.2) #> evaluate 0.23 2023-11-01 [1] CRAN (R 4.3.2) #> fansi 1.0.6 2023-12-08 [1] CRAN (R 4.3.2) #> fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.1) #> filelock 1.0.3 2023-12-11 [1] CRAN (R 4.3.2) #> fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.1) #> git2r 0.33.0 2023-11-26 [1] CRAN (R 4.3.2) #> gitcreds 0.1.2 2022-09-08 [1] CRAN (R 4.3.1) #> glue 1.7.0 2024-01-09 [1] CRAN (R 4.3.2) #> htmltools 0.5.7 2023-11-03 [1] CRAN (R 4.3.2) #> knitr 1.45 2023-10-30 [1] CRAN (R 4.3.2) #> lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.3.2) #> lpSolve 5.6.20 2023-12-10 [1] CRAN (R 4.3.2) #> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.1) #> pak 0.7.1.9000 2024-03-13 [1] local #> pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.1) #> pkgbuild 1.4.3 2023-12-10 [1] CRAN (R 4.3.2) #> pkgcache 2.2.1 2023-12-10 [1] CRAN (R 4.3.2) #> pkgdepends 0.7.1 2023-12-10 [1] CRAN (R 4.3.2) #> processx 3.8.3 2023-12-10 [1] CRAN (R 4.3.2) #> ps 1.7.6 2024-01-18 [1] CRAN (R 4.3.2) #> purrr 1.0.2 2023-08-10 [1] CRAN (R 4.3.1) #> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.3.1) #> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.3.1) #> R.oo 1.26.0 2024-01-24 [1] CRAN (R 4.3.2) #> R.utils 2.12.3 2023-11-18 [1] CRAN (R 4.3.2) #> R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.1) #> remotes 2.4.2.1 2023-07-18 [1] CRAN (R 4.3.1) #> reprex 2.1.0 2024-01-11 [1] CRAN (R 4.3.2) #> rlang 1.1.3 2024-01-10 [1] CRAN (R 4.3.2) #> rmarkdown 2.26 2024-03-05 [1] CRAN (R 4.3.2) #> rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.1) #> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.1) #> styler 1.10.2 2023-08-29 [1] CRAN (R 4.3.1) #> utf8 1.2.4 2023-10-22 [1] CRAN (R 4.3.2) #> vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.3.2) #> withr 3.0.0 2024-01-16 [1] CRAN (R 4.3.2) #> xfun 0.42 2024-02-08 [1] CRAN (R 4.3.2) #> yaml 2.3.8 2023-12-11 [1] CRAN (R 4.3.2) #> #> [1] /home/bob/R/x86_64-pc-linux-gnu-library/4.3 #> [2] /opt/R/4.3.2/lib/R/library #> #> ────────────────────────────────────────────────────────────────────────────── ```
ALanguillaume commented 3 months ago

Actually I encounter the errors with gitlab.com

gitcreds::gitcreds_cache_envvar("https://gitlab.com")
#> [1] "GITHUB_PAT_GITLAB_COM"

Sys.setenv(
  "GITHUB_PAT_GITLAB_COM" = "lefrenchmotdepasseverysecret"
)

pak::pkg_install("git::https://gitlab.com/antoine120/myprivatepkg")
#> Error: ! error in pak subprocess
#> Caused by error: 
#> ! Could not solve package dependencies:
#> * git::https://gitlab.com/antoine120/myprivatepkg: ! pkgdepends resolution error for
#> git::https://gitlab.com/antoine120/myprivatepkg.
#> Caused by error: 
#> ! Failed to download 'DESCRIPTION' from git repo at
#> <https://gitlab.com/antoine120/myprivatepkg>.
#> Caused by error in `stop(http_error(resp))`:
#> ! Unauthorized (HTTP 401).

pd <- pkgdepends::new_pkg_deps("git::https://gitlab.com/antoine120/myprivatepkg")
pd$solve()
pd$draw()
#> Error: ! Could not solve package dependencies:
#> * git::https://gitlab.com/antoine120/myprivatepkg: ! pkgdepends resolution error for
#> git::https://gitlab.com/antoine120/myprivatepkg.
#> Caused by error: 
#> ! Failed to download 'DESCRIPTION' from git repo at
#> <https://gitlab.com/antoine120/myprivatepkg>.
#> Caused by error in `stop(http_error(resp))`:
#> ! Unprocessable Entity (WebDAV; RFC 4918) (HTTP 422).

# Control with remotes to make sur the TOKEN is valid
options(
  remotes.git_credentials = git2r::cred_user_pass(
    username = "gitlab-ci-token", 
    password = Sys.getenv("GITHUB_PAT_GITLAB_COM")
  )
)
remotes::install_git("https://gitlab.com/antoine120/myprivatepkg")
#> Downloading git repo https://gitlab.com/antoine120/myprivatepkg
#> Registered S3 methods overwritten by 'callr':
#>   method                    from
#>   format.callr_status_error     
#>   print.callr_status_error
#> ── R CMD build ─────────────────────────────────────────────────────────────────
#> * checking for file ‘/tmp/RtmpIs2L18/file86c8627193d4/DESCRIPTION’ ... OK
#> * preparing ‘myprivatepkg’:
#> * checking DESCRIPTION meta-information ... OK
#> * checking for LF line-endings in source and make files and shell scripts
#> * checking for empty or unneeded directories
#> * building ‘myprivatepkg_0.0.0.9000.tar.gz’
#> Installing package into '/home/bob/R/x86_64-pc-linux-gnu-library/4.3'
#> (as 'lib' is unspecified)

Created on 2024-03-13 with reprex v2.1.0