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r-lib / pkgload

Simulate installing and loading a package
http://pkgload.r-lib.org
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load_all() errors when some packages need to be installed. #261

Closed olivroy closed 8 months ago

olivroy commented 11 months ago

It happened a couple times. It happened when I forked https://github.com/ProjectMOSAIC/mosaic with usethis::create_from_github("ProjectMOSAIC/mosaic") and then usethis::pr_init("branch") + load_all().

I have library(devtools) loaded if that helps. and had to use setwd() as the package had some weird .Rproj file. But it is unrelated. It happened to me before. Related to https://github.com/r-lib/pkgload/pull/184

I don't really know what may be causing this.

> devtools::load_all("~/rrr-forks/mosaic")
ℹ Loading mosaic
ℹ The packages "ggformula", "mosaicData", and "mosaicCore" (>= 0.7.0) are required.
✖ Would you like to install them?

1: Yes
2: No

Sélection : 1
Error: 
! error in pak subprocess
Caused by error in `get_remote_types(refs)`:
! Cannot parse package: ~/rrr-forks/mosaic.
ℹ See `?pkgdepends::pkg_refs()` for supported package sources.
Type .Last.error to see the more details.
> .Last.error.trace
1. devtools::load_all("~/rrr-forks/mosaic")
2. pkgload::load_all(path = path, reset = reset, recompile = recompile, …
3. pkgload:::load_imports(path)
4. pkgload:::deps_check_installed(path, imports)
5. rlang::check_installed(pkg, action = action, call = call)
6. local action(missing_pkgs)
7. pak::pkg_deps(path, upgrade = FALSE)
8. pak:::remote(function(...) { …
9. err$throw(res$error)
Session Info

```r > sessioninfo::session_info() ─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── setting value version R version 4.3.1 (2023-06-16 ucrt) os Windows 10 x64 (build 19044) system x86_64, mingw32 ui RStudio language (EN) collate French_Canada.utf8 ctype French_Canada.utf8 tz America/Toronto date 2023-10-12 rstudio 2023.09.0-daily+401 Desert Sunflower (desktop) pandoc 3.1.1 @ ~/AppData/Local/Programs/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown) ─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── ! package * version date (UTC) lib source askpass 1.2.0 2023-09-03 [1] CRAN (R 4.3.1) base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.3.0) brio 1.1.3 2021-11-30 [1] CRAN (R 4.3.0) cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.0) callr 3.7.3 2022-11-02 [1] CRAN (R 4.3.0) class 7.3-22 2023-05-03 [2] CRAN (R 4.3.1) classInt 0.4-10 2023-09-05 [1] CRAN (R 4.3.1) cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0) colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0) crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.0) credentials 2.0.1 2023-09-06 [1] CRAN (R 4.3.1) curl 5.1.0 2023-10-02 [1] CRAN (R 4.3.1) DBI 1.1.3 2022-06-18 [1] CRAN (R 4.3.0) desc 1.4.2 2022-09-08 [1] CRAN (R 4.3.0) devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.3.0) digest 0.6.33 2023-07-07 [1] CRAN (R 4.3.1) dplyr 1.1.3 2023-09-03 [1] CRAN (R 4.3.1) e1071 1.7-13 2023-02-01 [1] CRAN (R 4.3.0) ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.0) evaluate 0.22 2023-09-29 [1] CRAN (R 4.3.1) fansi 1.0.5 2023-10-08 [1] CRAN (R 4.3.1) fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0) fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.1) generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.0) gert 2.0.0 2023-09-26 [1] CRAN (R 4.3.1) ggplot2 3.4.3.9000 2023-10-05 [1] Github (tidyverse/ggplot2@8835709) gh 1.4.0 2023-02-22 [1] CRAN (R 4.3.0) gitcreds 0.1.2 2022-09-08 [1] CRAN (R 4.3.0) glue 1.6.2 2022-02-24 [1] CRAN (R 4.3.0) gt 0.10.0 2023-10-07 [1] CRAN (R 4.3.1) gtable 0.3.4 2023-08-21 [1] CRAN (R 4.3.1) htmltools 0.5.6.1 2023-10-06 [1] CRAN (R 4.3.1) htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.0) httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.1) httr2 0.2.3 2023-05-08 [1] CRAN (R 4.3.0) janitor 2.2.0.9000 2023-08-10 [1] https://sfirke.r-universe.dev (R 4.3.1) jsonlite 1.8.7 2023-06-29 [1] CRAN (R 4.3.1) KernSmooth 2.23-22 2023-07-10 [1] CRAN (R 4.3.1) kit 0.0.15 2023-10-01 [1] CRAN (R 4.3.1) knitr 1.44 2023-09-11 [1] CRAN (R 4.3.1) later 1.3.1 2023-05-02 [1] CRAN (R 4.3.0) lattice 0.21-8 2023-04-05 [2] CRAN (R 4.3.1) lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.0) lubridate 1.9.3 2023-09-27 [1] CRAN (R 4.3.1) magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0) MASS 7.3-60 2023-05-04 [2] CRAN (R 4.3.1) Matrix 1.6-1.1 2023-09-18 [1] CRAN (R 4.3.1) memoise 2.0.1 2021-11-26 [1] CRAN (R 4.3.0) mime 0.12 2021-09-28 [1] CRAN (R 4.3.0) miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.3.0) R mosaic 1.8.4.4 [?] R mosaicIncubator 1.0 [?] munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.0) openssl 2.1.1 2023-09-25 [1] CRAN (R 4.3.1) pak 0.6.0 2023-08-31 [1] local pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.0) pkgbuild 1.4.2 2023-06-26 [1] CRAN (R 4.3.1) pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.0) pkgdown 2.0.7 2022-12-14 [1] CRAN (R 4.3.0) pkgload 1.3.3 2023-09-22 [1] CRAN (R 4.3.1) prettyunits 1.2.0 2023-09-24 [1] CRAN (R 4.3.1) processx 3.8.2 2023-06-30 [1] CRAN (R 4.3.1) profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.0) promises 1.2.1 2023-08-10 [1] CRAN (R 4.3.1) proxy 0.4-27 2022-06-09 [1] CRAN (R 4.3.0) ps 1.7.5 2023-04-18 [1] CRAN (R 4.3.0) purrr 1.0.2 2023-08-10 [1] CRAN (R 4.3.1) quarto 1.3 2023-09-19 [1] CRAN (R 4.3.1) R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.0) rappdirs 0.3.3 2021-01-31 [1] CRAN (R 4.3.0) Rcpp 1.0.11 2023-07-06 [1] CRAN (R 4.3.1) remotes 2.4.2.1 2023-07-18 [1] CRAN (R 4.3.1) repr 1.1.6 2023-01-26 [1] CRAN (R 4.3.0) reuseme * 0.0.0.9005 2023-09-29 [1] local rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0) rmarkdown 2.25 2023-09-18 [1] CRAN (R 4.3.1) rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.3.0) rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.1) scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.0) sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0) sf 1.0-14 2023-07-11 [1] CRAN (R 4.3.1) shiny 1.7.5 2023-08-12 [1] CRAN (R 4.3.1) skimr 2.1.5 2022-12-23 [1] CRAN (R 4.3.0) snakecase 0.11.1 2023-08-27 [1] CRAN (R 4.3.1) stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.0) stringr 1.5.0 2022-12-02 [1] CRAN (R 4.3.0) sys 3.4.2 2023-05-23 [1] CRAN (R 4.3.1) testthat 3.2.0 2023-10-06 [1] CRAN (R 4.3.1) tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.0) tidyr 1.3.0 2023-01-24 [1] CRAN (R 4.3.0) tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.0) tidyverse 2.0.0 2023-02-22 [1] CRAN (R 4.3.0) timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.0) units 0.8-4 2023-09-13 [1] CRAN (R 4.3.1) urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.0) usethis * 2.2.2 2023-07-06 [1] CRAN (R 4.3.1) utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.0) vctrs 0.6.3 2023-06-14 [1] CRAN (R 4.3.1) withr 2.5.1 2023-09-26 [1] CRAN (R 4.3.1) xfun 0.40 2023-08-09 [1] CRAN (R 4.3.1) xml2 1.3.5 2023-07-06 [1] CRAN (R 4.3.1) xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.0) yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0) [1] ~/AppData/Local/R/win-library/4.3 [2] C:/Program Files/R/R-4.3.1/library R ── Package was removed from disk. ```

(some paths wiped)

lionel- commented 11 months ago

Do you get the same error if you run pak::pak("~/rrr-forks/mosaic")? If so that's either an issue with your package or with pak, in which case we should move the issue there.

olivroy commented 11 months ago

I am pretty sure it would be an issue with pak then. because the prompt is very handy when you do load_all(), it just sometimes doesn't work, and I can't explain why..

maybe it happens only when you don't have the package forked already installed, this happens. If you look at the session info, it says "Package removed from disk"

olivroy commented 8 months ago

@lionel- , I figured it out. 

deps <- pak::pkg_deps(path, upgrade = FALSE)

pak::pkg_deps() does not accept a full path.

pkgload (or devtools?) normalizes the path. So even if I call devtools::load_all(".") at the stage of deps_check_installed(), path was expanded to the full path C:/users/path/to/package

I think it could be replaced by pak::local_deps().

Otherwise, would require pak::pkg_deps() to accept a full path, but its documentation does not suggest it can handle a full path.