install error

[fipoucat]

I am facing the below error when installing ragg:

→ Will download 1 package with unknown size.

• ragg 1.2.2 → 1.2.6.9000 👷🏽‍♀️🔧 ⬇ (GitHub: 9cb92fd) ? Do you want to continue (Y/n) y ℹ Getting 1 pkg with unknown size ✔ Got ragg 1.2.6.9000 (source) (734.17 kB)
  ✔ Downloaded 1 package (734.17 kB)in 5.1s
  ℹ Packaging ragg 1.2.6.9000 ✔ Packaged ragg 1.2.6.9000 (2.5s)
  ℹ Building ragg 1.2.6.9000
  ✖ Failed to build ragg 1.2.6.9000
  Error:
  ! error in pak subprocess Caused by error in stop_task_build(state, worker): ! Failed to build source package 'ragg' Type .Last.error to see the more details.

Any hint?

[thomasp85]

ragg has just been updated but binaries has not yet been build. So pak is trying to install the source version which requires a number of system libraries that I guess is not available on your system. Either force binaries during install (will currently not install the latest version, wait a few days for cran to serve the newest binaries, or install the required system libraries as given in the DESCRIPTION file

[eBsowka]

Evening It seems I have the same issue: using command: Rscript -e 'withr::with_libpaths(new = "/opt/conda/envs/env_name/lib/R/library", pak::pak("r-lib/ragg@v1.2.0"))' or versions v1.2.5, v1.2.6 or not specifying one I get: Using bundled GitHub PAT. Please add your own PAT using gitcreds::gitcreds_set(). ✔ Updated metadata database: 2.81 MB in 8 files. ✔ Updating metadata database ... done

→ Will update 1 package. → Will download 1 package with unknown size.

• ragg 1.2.5 → 1.2.0 [bld][cmp][dl] (GitHub: abbd24c) + ✔ libfreetype6-dev, ✔ libjpeg-dev, ✔ libpng-dev, ✔ libtiff-dev ✔ All system requirements are already installed.

ℹ Getting 1 pkg with unknown size ✔ Got ragg 1.2.0 (source) (2.41 MB) ℹ Packaging ragg 1.2.0 ✔ Packaged ragg 1.2.0 (5s) ℹ Building ragg 1.2.0 ✖ Failed to build ragg 1.2.0 Error: ! error in pak subprocess Caused by error in stop_task_build(state, worker): ! Failed to build source package 'ragg' Full installation output:

• installing source package ‘ragg’ ... staged installation is only possible with locking ** using non-staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu Using PKG_LIBS=-lfreetype -lpng16 -lm -lz -lm -lz -ltiff -lwebp -lzstd -llzma -ljbig -ljpeg -lz -lm -----------------------------[ ANTICONF ]------------------------------- Configuration failed to find one of freetype2 libpng libtiff-4. Try installing:
  • deb: libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev (Debian, Ubuntu, etc)
  • rpm: freetype-devel libpng-devel libtiff-devel libjpeg-turbo-devel (Fedora, CentOS, RHEL)

  • csw: libfreetype_dev libpng16_dev libtiff_dev libjpeg_dev (Solaris) If freetype2 libpng libtiff-4 is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a freetype2 libpng libtiff-4.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' -------------------------- [ERROR MESSAGE] --------------------------- In file included from /opt/conda/envs//x86_64-conda-linux-gnu/sysroot/usr/include/features.h:361, from /opt/conda/envs/env_name/x86_64-conda-linux-gnu/sysroot/usr/include/limits.h:27, from /opt/conda/envs/env_name/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/limits.h:205, from /opt/conda/envs/env_name/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/syslimits.h:7, from /opt/conda/envs/env_name/lib/gcc/x86_64-conda-linux-gnu/13.2.0/include/limits.h:34, from /usr/include/libpng16/pngconf.h:31, from /usr/include/libpng16/png.h:339, from :2: /usr/include/x86_64-linux-gnu/sys/cdefs.h:482:49: error: missing binary operator before token "(" 482 | #if GNUC_PREREQ (4,8) || __glibc_clang_prereq (3,5) | ^ In file included from /opt/conda/envs/env_name/x86_64-conda-linux-gnu/sysroot/usr/include/stdio.h:932, from /usr/include/libpng16/pngconf.h:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:228:17: error: missing binary operator before token "(" 228 | #if GLIBC_USE (DEPRECATED_GETS) | ^

    ERROR: configuration failed for package ‘ragg’

• removing ‘/tmp/Rtmp0WKHaK/pkg-lib4b11528370/ragg’

  Backtrace:

  1. withr::with_libpaths(new = "/opt/conda/envs/etl_qa_characterise_omop/lib/R/library", …
  2. base::force(code)
  3. pak::pak("r-lib/ragg@v1.2.0")
  4. pak::pkg_install(pkg, ...)
  5. pak:::remote(function(...) get("pkg_install_do_plan", asNamespace("pak"))(...), …

  6. err$throw(res$error)

     Subprocess backtrace:

  7. base::withCallingHandlers(cli_message = function(msg) { …
  8. get("pkg_install_do_plan", asNamespace("pak"))(...)
  9. proposal$install()
  10. pkgdepends::install_package_plan(plan, lib = private$library, num_workers = nw, …
  11. base::withCallingHandlers({ …
  12. pkgdepends:::handle_events(state, events)
  13. pkgdepends:::handle_event(state, i)
  14. pkgdepends:::stop_task(state, worker)
  15. pkgdepends:::stop_task_build(state, worker)
  16. base::throw(new_pkg_build_error("Failed to build source package {pkg}", …
  17. | base::signalCondition(cond)
  18. global (function (e) … Execution halted

Any ideas?

[thomasp85]

I do not know how conda works but it seems that people in general install conda specific packages when they want to use it. In any regards this is a conda issue not a ragg issue

[jxu]

Did you try installing the libraries it recommended in the error message? What OS are you on?