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r-lib / revdepcheck

R package reverse dependency checking
https://revdepcheck.r-lib.org
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Unable to check reverse dependencies due to error with Bioconductor #302

Closed adamhsparks closed 3 years ago

adamhsparks commented 3 years ago

Recently when I've attempted to use revdepcheck::revdep_check() it fails with this error.

I've installed BioConductor using the instructions making sure it's for R 4.1.0, http://bioconductor.org/install/, but this still fails. This URL when checked in a browser does not exist there either.

> revdepcheck::revdep_check()
── INSTALL ─────────────────────────────────────────────────────────────────────────────────────────────── 2 versions ──
Installing CRAN version of GSODR
also installing the dependencies ‘R.oo’, ‘R.methodsS3’, ‘countrycode’, ‘R.utils’

Error: (converted from warning) unable to access index for repository https://bioconductor.org/packages/3.13/bioc/bin/macosx/big-sur-arm64/contrib/4.1:
  cannot open URL 'https://bioconductor.org/packages/3.13/bioc/bin/macosx/big-sur-arm64/contrib/4.1/PACKAGES'

This seems to be a duplicate of https://github.com/r-lib/revdepcheck/issues/173, which is closed? Use reprex::reprex() gives me the same uninformative reprex as that issue as well,

author: adamsparks date: 2021-06-29 output: "reprex::reprex_document" title: next-esok_reprex.R

revdepcheck::revdep_check()
#> Error: `pkgdir` must contain a DESCRIPTION file

Created on 2021-06-29 by the reprex package (v2.0.0)

Session info

[ins] r$> sessioninfo::session_info()
─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.1.0 (2021-05-18)
 os       macOS Big Sur 11.4
 system   aarch64, darwin20
 ui       X11
 language (EN)
 collate  en_AU.UTF-8
 ctype    en_AU.UTF-8
 tz       Australia/Perth
 date     2021-06-29

─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
 package     * version    date       lib source
 backports     1.2.1      2020-12-09 [1] CRAN (R 4.1.0)
 callr         3.7.0      2021-04-20 [1] CRAN (R 4.1.0)
 cli           2.5.0.9000 2021-06-29 [1] Github (r-lib/cli@4de5ddd)
 clipr         0.7.1      2020-10-08 [1] CRAN (R 4.1.0)
 crayon        1.4.1      2021-02-08 [1] CRAN (R 4.1.0)
 digest        0.6.27     2020-10-24 [1] CRAN (R 4.1.0)
 ellipsis      0.3.2      2021-04-29 [1] CRAN (R 4.1.0)
 evaluate      0.14       2019-05-28 [1] CRAN (R 4.1.0)
 fansi         0.5.0      2021-05-25 [1] CRAN (R 4.1.0)
 fs            1.5.0      2020-07-31 [1] CRAN (R 4.1.0)
 glue          1.4.2      2020-08-27 [1] CRAN (R 4.1.0)
 highr         0.9        2021-04-16 [1] CRAN (R 4.1.0)
 htmltools     0.5.1.1    2021-01-22 [1] CRAN (R 4.1.0)
 knitr         1.33       2021-04-24 [1] CRAN (R 4.1.0)
 lifecycle     1.0.0      2021-02-15 [1] CRAN (R 4.1.0)
 magrittr      2.0.1      2020-11-17 [1] CRAN (R 4.1.0)
 pillar        1.6.1      2021-05-16 [1] CRAN (R 4.1.0)
 pkgconfig     2.0.3      2019-09-22 [1] CRAN (R 4.1.0)
 processx      3.5.2      2021-04-30 [1] CRAN (R 4.1.0)
 ps            1.6.0      2021-02-28 [1] CRAN (R 4.1.0)
 purrr         0.3.4      2020-04-17 [1] CRAN (R 4.1.0)
 R6            2.5.0      2020-10-28 [1] CRAN (R 4.1.0)
 reprex        2.0.0      2021-04-02 [1] CRAN (R 4.1.0)
 rlang         0.4.11     2021-04-30 [1] CRAN (R 4.1.0)
 rmarkdown     2.9        2021-06-15 [1] CRAN (R 4.1.0)
 rsthemes      0.2.1.9000 2021-06-16 [1] Github (gadenbuie/rsthemes@19299e5)
 rstudioapi    0.13       2020-11-12 [1] CRAN (R 4.1.0)
 sessioninfo   1.1.1      2018-11-05 [1] CRAN (R 4.1.0)
 styler        1.4.1      2021-03-30 [1] CRAN (R 4.1.0)
 tibble        3.1.2      2021-05-16 [1] CRAN (R 4.1.0)
 utf8          1.2.1      2021-03-12 [1] CRAN (R 4.1.0)
 vctrs         0.3.8      2021-04-29 [1] CRAN (R 4.1.0)
 withr         2.4.2      2021-04-18 [1] CRAN (R 4.1.0)
 xfun          0.24       2021-06-15 [1] CRAN (R 4.1.0)
 yaml          2.2.1      2020-02-01 [1] CRAN (R 4.1.0)

[1] /Users/adamsparks/Library/R/4.1/library
[2] /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library
gaborcsardi commented 3 years ago

Seems like you are running this on aarch64 which is not supported well.