search

r-lidar / rlas

R package to read and write las and laz files used to store LiDAR data
https://cran.r-project.org/package=rlas
GNU General Public License v3.0
34 stars 14 forks source link

devtools install_github Windows error #37

Closed JakubCha closed 5 years ago

JakubCha commented 5 years ago

Hello,

I have errors installing rlas using devtools on Windows. Seems like these errors are related in many ways to new version of laslib that @Jean-Romain updated a few hours ago.` Here's the log:

-  building 'rlas_1.3.2.tar.gz'

* installing *source* package 'rlas' ...
** libs
c:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"E:/R-3.5.3/include" -DNDEBUG -DNDEBUG -DUNORDERED -I. -I../inst/include/ -I"E:/R-3.5.3/library/Rcpp/include" -I"E:/R-3.5.3/library/BH/include"        -O2 -Wall  -mtune=generic -c LASlib/lasreader_txt.cpp -o LASlib/lasreader_txt.o
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/combaseapi.h:155:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/objbase.h:14,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/ole2.h:17,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wtypes.h:12,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/winscard.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:97,
                 from LASlib/lasreader_txt.cpp:37:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/objidlbase.h:864:18: error: macro "Realloc" requires 3 arguments, but only 2 given
         SIZE_T cb) = 0;
                  ^
In file included from ../inst/include/lasdefinitions.hpp:61:0,
                 from ../inst/include/lasreader.hpp:51,
                 from ../inst/include/lasreader_txt.hpp:40,
                 from LASlib/lasreader_txt.cpp:31:
../inst/include/laspoint.hpp: In member function 'U64 LASwavepacket::getOffset() const':
../inst/include/laspoint.hpp:47:60: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline U64 getOffset() const {return ((U64*)&(data[1]))[0];};
                                                            ^
../inst/include/laspoint.hpp: In member function 'U32 LASwavepacket::getSize() const':
../inst/include/laspoint.hpp:48:58: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline U32 getSize() const {return ((U32*)&(data[9]))[0];};
                                                          ^
../inst/include/laspoint.hpp: In member function 'F32 LASwavepacket::getLocation() const':
../inst/include/laspoint.hpp:49:63: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline F32 getLocation() const {return ((F32*)&(data[13]))[0];};
                                                               ^
../inst/include/laspoint.hpp: In member function 'F32 LASwavepacket::getXt() const':
../inst/include/laspoint.hpp:50:57: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline F32 getXt() const {return ((F32*)&(data[17]))[0];};
                                                         ^
../inst/include/laspoint.hpp: In member function 'F32 LASwavepacket::getYt() const':
../inst/include/laspoint.hpp:51:57: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline F32 getYt() const {return ((F32*)&(data[21]))[0];};
                                                         ^
../inst/include/laspoint.hpp: In member function 'F32 LASwavepacket::getZt() const':
../inst/include/laspoint.hpp:52:57: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline F32 getZt() const {return ((F32*)&(data[25]))[0];};
                                                         ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::setOffset(U64)':
../inst/include/laspoint.hpp:54:58: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setOffset(U64 offset) {((U64*)&(data[1]))[0] = offset;};
                                                          ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::setSize(U32)':
../inst/include/laspoint.hpp:55:54: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setSize(U32 size) {((U32*)&(data[9]))[0] = size;};
                                                      ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::setLocation(F32)':
../inst/include/laspoint.hpp:56:64: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setLocation(F32 location) { ((F32*)&(data[13]))[0] = location;};
                                                                ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::setXt(F32)':
../inst/include/laspoint.hpp:57:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setXt(F32 xt) {((F32*)&(data[17]))[0] = xt;};
                                                   ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::setYt(F32)':
../inst/include/laspoint.hpp:58:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setYt(F32 yt) {((F32*)&(data[21]))[0] = yt;};
                                                   ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::setZt(F32)':
../inst/include/laspoint.hpp:59:51: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setZt(F32 zt) {((F32*)&(data[25]))[0] = zt;};
                                                   ^
../inst/include/laspoint.hpp: In member function 'void LASwavepacket::flipDirection()':
../inst/include/laspoint.hpp:60:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void flipDirection() {((F32*)&(data[17]))[0] *= -1; ((F32*)&(data[21]))[0] *= -1; ((F32*)&(data[25]))[0] *= -1;};
                                                     ^
../inst/include/laspoint.hpp:60:83: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void flipDirection() {((F32*)&(data[17]))[0] *= -1; ((F32*)&(data[21]))[0] *= -1; ((F32*)&(data[25]))[0] *= -1;};
                                                                                   ^
../inst/include/laspoint.hpp:60:113: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void flipDirection() {((F32*)&(data[17]))[0] *= -1; ((F32*)&(data[21]))[0] *= -1; ((F32*)&(data[25]))[0] *= -1;};
                                                                                                                 ^
In file included from ../inst/include/lasreader.hpp:51:0,
                 from ../inst/include/lasreader_txt.hpp:40,
                 from LASlib/lasreader_txt.cpp:31:
../inst/include/lasdefinitions.hpp: In member function 'U32 LASvlr_wave_packet_descr::getNumberOfSamples() const':
../inst/include/lasdefinitions.hpp:142:69: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline U32 getNumberOfSamples() const {return ((U32*)&(data[2]))[0];};
                                                                     ^
../inst/include/lasdefinitions.hpp: In member function 'U32 LASvlr_wave_packet_descr::getTemporalSpacing() const':
../inst/include/lasdefinitions.hpp:143:69: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline U32 getTemporalSpacing() const {return ((U32*)&(data[6]))[0];};
                                                                     ^
../inst/include/lasdefinitions.hpp: In member function 'F64 LASvlr_wave_packet_descr::getDigitizerGain() const':
../inst/include/lasdefinitions.hpp:144:68: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline F64 getDigitizerGain() const {return ((F64*)&(data[10]))[0];};
                                                                    ^
../inst/include/lasdefinitions.hpp: In member function 'F64 LASvlr_wave_packet_descr::getDigitizerOffset() const':
../inst/include/lasdefinitions.hpp:145:70: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline F64 getDigitizerOffset() const {return ((F64*)&(data[18]))[0];};
                                                                      ^
../inst/include/lasdefinitions.hpp: In member function 'void LASvlr_wave_packet_descr::setNumberOfSamples(U32)':
../inst/include/lasdefinitions.hpp:148:68: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setNumberOfSamples(U32 samples) {((U32*)&(data[2]))[0] = samples;};
                                                                    ^
../inst/include/lasdefinitions.hpp: In member function 'void LASvlr_wave_packet_descr::setTemporalSpacing(U32)':
../inst/include/lasdefinitions.hpp:149:68: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setTemporalSpacing(U32 spacing) {((U32*)&(data[6]))[0] = spacing;};
                                                                    ^
../inst/include/lasdefinitions.hpp: In member function 'void LASvlr_wave_packet_descr::setDigitizerGain(F64)':
../inst/include/lasdefinitions.hpp:150:64: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setDigitizerGain(F64 gain) {((F64*)&(data[10]))[0] = gain;};
                                                                ^
../inst/include/lasdefinitions.hpp: In member function 'void LASvlr_wave_packet_descr::setDigitizerOffset(F64)':
../inst/include/lasdefinitions.hpp:151:68: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
   inline void setDigitizerOffset(F64 offset) {((F64*)&(data[18]))[0] = offset;};
                                                                    ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/combaseapi.h:155:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/objbase.h:14,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/ole2.h:17,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wtypes.h:12,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/winscard.h:10,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:97,
                 from LASlib/lasreader_txt.cpp:37:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/objidlbase.h: At global scope:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/objidlbase.h:864:22: error: 'Realloc' declared as a 'virtual' field
         SIZE_T cb) = 0;
                      ^
In file included from E:/R-3.5.3/include/R.h:91:0,
                 from ../inst/include/mydefs.hpp:34,
                 from ../inst/include/lasdefinitions.hpp:59,
                 from ../inst/include/lasreader.hpp:51,
                 from ../inst/include/lasreader_txt.hpp:40,
                 from LASlib/lasreader_txt.cpp:31:
E:/R-3.5.3/include/R_ext/RS.h:74:37: error: expected identifier before '(' token
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                     ^
E:/R-3.5.3/include/R_ext/RS.h:74:47: error: 'parameter' declared as function returning a function
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                               ^
E:/R-3.5.3/include/R_ext/RS.h:74:50: error: expected ')' before ',' token
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                                  ^
E:/R-3.5.3/include/R_ext/RS.h:74:37: error: expected identifier before '(' token
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                     ^
E:/R-3.5.3/include/R_ext/RS.h:74:47: error: 'parameter' declared as function returning a function
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                               ^
E:/R-3.5.3/include/R_ext/RS.h:74:50: error: expected ')' before ',' token
 #define Free(p)        (R_chk_free( (void *)(p) ), (p) = NULL)
                                                  ^
make: *** [E:/R-3.5.3/etc/x64/Makeconf:215: LASlib/lasreader_txt.o] Error 1
ERROR: compilation failed for package 'rlas'
* removing 'E:/R-3.5.3/library/rlas'
In R CMD INSTALL
Error in i.p(...) : 
  (converted from warning) installation of package ‘C:/.../AppData/Local/Temp/RtmpiOIUjs/file44206689189f/rlas_1.3.2.tar.gz’ had non-zero exit status
Jean-Romain commented 5 years ago

Yes I know, I sent the package to the CRAN windows builder yesterday and it failed compiling the package on Windows. I did not reproduced myself yet since I don't have Windows. Moreover I don't understand the errors. They look to be related to R stuff not to my code that did not really changed actually. I will investigate. I hoped it could be a temporary issue on CRAN builder but no.

Jean-Romain commented 5 years ago

Ok it was not such a big issue. I inverted two lines of code after updating LASlib. Fixed and tested on CRAN and on rhub. Should be ok for you as well. 0739858