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r-spatial / classInt

Choose Univariate Class Intervals
https://r-spatial.github.io/classInt/
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(converted from warning) installation of package ‘classInt’ had non-zero exit status #40

Closed carlottaolivero closed 1 year ago

carlottaolivero commented 2 years ago

Hi, i am trying to download this package > devtools::install_github("outbreak-info/R-outbreak-info")

and I am getting the following problem:

Downloading GitHub repo outbreak-info/R-outbreak-info@HEAD These packages have more recent versions available. It is recommended to update all of them. Which would you like to update?

1: All
2: CRAN packages only
3: None
4: Rcpp (1.0.5 -> 1.0.9 ) [CRAN] 5: magrittr (1.5 -> 2.0.3 ) [CRAN] 6: withr (2.3.0 -> 2.5.0 ) [CRAN] 7: utf8 (1.1.4 -> 1.2.2 ) [CRAN] 8: fansi (0.4.1 -> 1.0.3 ) [CRAN] 9: tibble (3.0.4 -> 3.1.8 ) [CRAN] 10: R6 (2.5.0 -> 2.5.1 ) [CRAN] 11: glue (1.4.2 -> 1.6.2 ) [CRAN] 12: generics (0.1.0 -> 0.1.3 ) [CRAN] 13: ellipsis (0.3.1 -> 0.3.2 ) [CRAN] 14: hms (0.5.3 -> 1.1.2 ) [CRAN] 15: crayon (1.3.4 -> 1.5.2 ) [CRAN] 16: colorspace (1.4-1 -> 2.0-3 ) [CRAN] 17: viridisLite (0.3.0 -> 0.4.1 ) [CRAN] 18: RColorBrewer (1.1-2 -> 1.1-3 ) [CRAN] 19: farver (2.0.3 -> 2.1.1 ) [CRAN] 20: DBI (1.1.0 -> 1.1.3 ) [CRAN] 21: openssl (1.4.3 -> 2.0.3 ) [CRAN] 22: mime (0.9 -> 0.12 ) [CRAN] 23: jsonlite (1.7.1 -> 1.8.2 ) [CRAN] 24: curl (4.3 -> 4.3.3 ) [CRAN] 25: purrr (0.3.4 -> 0.3.5 ) [CRAN] 26: stringi (1.5.3 -> 1.7.8 ) [CRAN] 27: clipr (0.7.1 -> 0.8.0 ) [CRAN] 28: scales (1.1.1 -> 1.2.1 ) [CRAN] 29: isoband (0.2.2 -> 0.2.6 ) [CRAN] 30: gtable (0.3.0 -> 0.3.1 ) [CRAN] 31: digest (0.6.27 -> 0.6.29) [CRAN] 32: yaml (2.2.1 -> 2.3.5 ) [CRAN] 33: httr (1.4.2 -> 1.4.4 ) [CRAN] 34: tidyr (1.1.3 -> 1.2.1 ) [CRAN] 35: stringr (1.4.0 -> 1.4.1 ) [CRAN] 36: plyr (1.8.6 -> 1.8.7 ) [CRAN] 37: readr (1.4.0 -> 2.1.3 ) [CRAN]

Enter one or more numbers, or an empty line to skip updates: Installing 2 packages: classInt, sf

There are binary versions available but the source versions are later: binary source needs_compilation classInt 0.4-3 0.4-8 TRUE sf 1.0-7 1.0-8 TRUE

Do you want to install from sources the packages which need compilation? (Yes/no/cancel) installing the source packages ‘classInt’, ‘sf’

trying URL 'https://cran.rstudio.com/src/contrib/classInt_0.4-8.tar.gz' Content type 'application/x-gzip' length 438767 bytes (428 KB)

downloaded 428 KB

trying URL 'https://cran.rstudio.com/src/contrib/sf_1.0-8.tar.gz' Content type 'application/x-gzip' length 3472914 bytes (3.3 MB)

downloaded 3.3 MB

I am using macOS Monterey 12.6 I have installed gfortran-6.1 Any help? thank you very much

rsbivand commented 2 years ago

Do not install source packages on macOS unless you must; always run update.packages(type="binary", checkBuilt=TRUE) before installing anything from github - type="binary" avoids source installs, and checkBuilt=TRUE updates stale installed packages from earlier R versions.

Try to avoid the RStudio mirror, it seems often to be somewhat stale.

See for example: https://cran.r-project.org/view=Spatial, section "Installing packages linking to PROJ, GDAL or GEOS" at foot. If you must install source packages, use https://mac.r-project.org/tools/ - you do not have the stipulated Fortran compiler (you say you have 6.1, for Intel 8.2, for M1 12.0.1 20220312).

As you can see from https://cran.r-project.org/package=classInt, both architectures are up-to-date for classInt, (and sf https://cran.r-project.org/package=sf).

The off-CRAN and probably fragile package you are trying to install commits many sins, especially that of having many strong dependencies, you should have asked for installation help there.