Can't load gstat even after re-installing

[nafreymueller]

gstat can't be loaded anymore, even after re-installing. Removing, and re-installing the package doesn't work either.

library(gstat)
Error: package or namespace load failed for ‘gstat’:
 package slot missing from signature for generic ‘coerce’
and classes STFDF, RasterBrick
cannot use with duplicate class names (the package may need to be re-installed)

sessionInfo()
R version 4.4.1 (2024-06-14)
Platform: aarch64-apple-darwin20
Running under: macOS Ventura 13.6.1

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Australia/Adelaide
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] INLA_24.05.01-1         sp_2.1-4                Matrix_1.7-0           
 [4] stringr_1.5.1           ggpubr_0.6.0            beepr_2.0              
 [7] terrainr_0.7.5          rnaturalearthdata_1.0.0 rnaturalearth_1.0.1    
[10] stars_0.6-6             abind_1.4-5             sf_1.0-16              
[13] terra_1.7-78            ggOceanMaps_2.2.0       ggplot2_3.5.1          
[16] dplyr_1.1.4             data.table_1.15.4      

loaded via a namespace (and not attached):
 [1] spatstat.sparse_3.1-0  lubridate_1.9.3        httr_1.4.7            
 [4] RColorBrewer_1.1-3     tools_4.4.1            backports_1.5.0       
 [7] utf8_1.2.4             R6_2.5.1               withr_3.0.0           
[10] gridExtra_2.3          cli_3.6.3              spatstat.explore_3.3-1
[13] sandwich_3.1-0         mvtnorm_1.2-5          spatstat.data_3.1-2   
[16] proxy_0.4-27           readxl_1.4.3           rstudioapi_0.16.0     
[19] generics_0.1.3         spatstat.random_3.3-1  car_3.1-2             
[22] wesanderson_0.3.7      fansi_1.0.6            DescTools_0.99.54     
[25] lifecycle_1.0.4        carData_3.0-5          grid_4.4.1            
[28] lattice_0.22-6         pathroutr_0.2.1        pillar_1.9.0          
[31] boot_1.3-30            gld_2.6.6              codetools_0.2-20      
[34] glue_1.7.0             spatstat.univar_3.0-0  vctrs_0.6.5           
[37] cellranger_1.1.0       gtable_0.3.5           audio_0.1-11          
[40] gmm_1.8                units_0.8-5            nlme_3.1-165          
[43] CircStats_0.2-6        xts_0.14.0             TMB_1.9.14            
[46] tmvtnorm_1.6           crsmeta_0.3.0          KernSmooth_2.23-24    
[49] colorspace_2.1-0       DBI_1.2.3              raster_3.6-26         
[52] Exact_3.3              tidyselect_1.2.1       compiler_4.4.1        
[55] expm_0.999-9           reproj_0.7.0           scales_1.3.0          
[58] traipse_0.3.0          proj4_1.0-14           classInt_0.4-10       
[61] fmesher_0.1.7          goftest_1.2-3          spatstat.utils_3.0-5  
[64] pkgconfig_2.0.3        rlang_1.1.4            zoo_1.8-12            
[67] jsonlite_1.8.8         magrittr_2.0.3         patchwork_1.2.0       
[70] munsell_0.5.1          Rcpp_1.0.13            viridis_0.6.5         
[73] stringi_1.8.4          rootSolve_1.8.2.4      MASS_7.3-61           
[76] parallel_4.4.1         lmom_3.0               deldir_2.0-4          
[79] splines_4.4.1          tensor_1.5             aniMotum_1.2-06       
[82] trip_1.10.0            spatstat.geom_3.3-2    ggsignif_0.6.4        
[85] stats4_4.4.1           tidyr_1.3.1            purrr_1.0.2           
[88] polyclip_1.10-7        broom_1.0.6            e1071_1.7-14          
[91] rstatix_0.7.2          viridisLite_0.4.2      class_7.3-22          
[94] unifir_0.2.4           intervals_0.15.4       tibble_3.2.1          
[97] ellipse_0.5.0          timechange_0.3.0    

[edzer]

Did you try removing it first? What is reported when trying to install after a remove?

[nafreymueller]

Yes I've tried this and still nothing. After experimenting with other folks in the office, the issue does appear to be exclusive to RStudio (but not base R, which runs fine) running on a M1 (or other Apple Silicon-based) Mac. I had a similar issue with terra #1577, so this seems to be a deeper-set problem than gstat unfortunately.

[edzer]

The CRAN repository used? Close here?

[nafreymueller]

It seems to be any of them I've tried. Guessing it's at some deeper level. Closing here is probably fine.