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r-spatial / lwgeom

bindings to the liblwgeom library
https://r-spatial.github.io/lwgeom/
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st_make_valid broke my shape #48

Closed BastienFR closed 4 years ago

BastienFR commented 4 years ago

I've encountered a problem with the function st_make_valid and I wanted to share it here to make people aware of this behavior. It may be a bug, but it may also be data specific so I'm not sure something could be change in the package to fix it.

Anyway, I've notice that using st_make_valid on a shape made the st_write function fail for a specific dataset.

Here is a reproducible example:

Preparing the session:

library(sf)
library(dplyr)
library(lwgeom)

First, copy paste the dput of the shape. Sorry the dput is enormous, I couldn't make it smaller and still reproduce the behavior.

Click to see the dput of the shape fsa.raw <- structure(list(FSA = c("S4R", "S4S", "S4T", "S4V", "S4W", "S4X" ), FSA_NAME = c("REGINA", "REGINA", "REGINA", "REGINA", "REGINA", "REGINA"), PR = c("47", "47", "47", "47", "47", "47"), geometry = structure(list( structure(list(list(structure(c(5302796.69950482, 5302882.76781702, 5302897.75194831, 5302963.92581344, 5302983.71723835, 5302966.90444534, 5303004.80258904, 5303025.82401457, 5303048.90488679, 5303008.76564428, 5303024.97156681, 5303170.31662308, 5303383.54436708, 5303455.00266521, 5303610.19156592, 5303683.97391793, 5303714.73317942, 5303769.09722665, 5303806.06535403, 5303793.4050644, 5303926.96035945, 5303941.71399835, 5304177.84575214, 5304580.28235237, 5304603.31619287, 5304649.15294485, 5305385.42042901, 5305438.70104347, 5305659.0726907, 5306134.75324817, 5306161.53403289, 5306170.6904644, 5306261.0409186, 5306336.97638294, 5306415.202418, 5306442.48981033, 5306448.71291325, 5306491.85980936, 5307900.12159158, 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c("sfc_MULTIPOLYGON", "sfc"), precision = 0, bbox = structure(c(xmin = 5298777.17436723, ymin = 1673377.36409231, xmax = 5312954.79870202, ymax = 1687643.44130981 ), class = "bbox"))), row.names = c(NA, -6L), class = c("sf", "data.frame"), sf_column = "geometry", agr = structure(c(FSA = NA_integer_, FSA_NAME = NA_integer_, PR = NA_integer_), class = "factor", .Label = c("constant", "aggregate", "identity")))

Then, "fix" the shape with st_make_valid:

fsa.clean <- fsa.raw %>% 
  st_make_valid()

Now, if I write the shape for the raw data, it works:

st_write(fsa.raw, "data/crap.shp", delete_layer = T)
Deleting layer `crap' using driver `ESRI Shapefile'
Writing layer `crap' to data source `data/crap.shp' using driver `ESRI Shapefile'
Writing 6 features with 3 fields and geometry type Multi Polygon.

But it fails with the clean dataset:

st_write(fsa.clean, "data/crap.shp", delete_layer = T)
Deleting layer `crap' using driver `ESRI Shapefile'
Writing layer `crap' to data source `data/crap.shp' using driver `ESRI Shapefile'
Writing 6 features with 3 fields and geometry type Unknown (any).
Failed to create feature 5 in crap
Error in CPL_write_ogr(obj, dsn, layer, driver, as.character(dataset_options),  : 
  Feature creation failed.
In addition: Warning message:
In CPL_write_ogr(obj, dsn, layer, driver, as.character(dataset_options),  :
  GDAL Error 1: Attempt to write non-polygon (MULTIPOLYGON) geometry to POLYGON type shapefile.
edzer commented 4 years ago

Examine fsa.clean, look at the geometry types, and then try

> p = st_collection_extract(fsa.clean, "POLYGON")
> st_write(p, "p.shp")
Writing layer `p' to data source `p.shp' using driver `ESRI Shapefile'
Writing 6 features with 3 fields and geometry type Multi Polygon.
BastienFR commented 4 years ago

Great, thanks it works. And I think I understand why. The st_make_valid function was changing for some reason the type of geometry for the sixth observation. Shapefiles needs to have only one type of geometry so the function st_collection_extract make sure all geometries are the same within the object. Thanks again for the quick answer.