Closed sooyoung1021 closed 1 month ago
@sooyoung1021 please here I have edited some of your script 👇
library(rgee)
library(sf)
ee_Initialize()
# Defined date of extracting data
start <- "2024-05-01"
end <- "2024-05-30"
# Load the ERA5 image collection
variables <- c(
'temperature_2m_min',
'temperature_2m_max',
'temperature_2m',
'total_precipitation_sum'
)
# Define the dataset with variables
era5 <- ee$ImageCollection('ECMWF/ERA5_LAND/DAILY_AGGR')$
filterDate(start, end)$
select(variables)
# Load nigeria shapefile as sf (https://data.humdata.org/dataset/nigeria-admin-level-2)
nigeria <- read_sf("C:/Users/USER/Downloads/nigeria_admin_level_2/Nigeria_Admin_Level_2.shp")
# Extract the time series from Image Collection usign the shapefile
ee_ng_era <- ee_extract(
x=era5,
y=nigeria["StateCode"],
sf = F)
Same error still happens. Any idea why? :/
I asked my other colleague to try and same error happens for him too.
I asked my other colleague to try and same error happens for him too.
@sooyoung1021 Please, You can share some script reproducible with example data?
I copy-pasted your script and downloaded the shapefile you used in your example and ran the code. That's when the error got produced.
I'm closing this issue because there is no clear reproducible example.
Well I think it's clearly a bug that happens to some people and since it doesn't happen on your end, I don't know how else to provide examples or proof. If you'd like to see the live demo of it happening, would be more than happy to connect virtually and show you.
At submit an issue, please attached the following information of your
rgee
session:[x] You have the Python API installed (from terminal):
[x] You can find the credentials file on your system:
FALSE
[x] You can run a simple EE command from R:
$type [1] "Image"
$bands $bands[[1]] $bands[[1]]$id [1] "elevation"
$bands[[1]]$data_type $bands[[1]]$data_type$type [1] "PixelType"
$bands[[1]]$data_type$precision [1] "int"
$bands[[1]]$data_type$min [1] -32768
$bands[[1]]$data_type$max [1] 32767
$bands[[1]]$dimensions [1] 1296001 417601
$bands[[1]]$crs [1] "EPSG:4326"
$bands[[1]]$crs_transform $bands[[1]]$crs_transform[[1]] [1] 0.0002777778
$bands[[1]]$crs_transform[[2]] [1] 0
$bands[[1]]$crs_transform[[3]] [1] -180.0001
$bands[[1]]$crs_transform[[4]] [1] 0
$bands[[1]]$crs_transform[[5]] [1] -0.0002777778
$bands[[1]]$crs_transform[[6]] [1] 60.00014
$version [1] -1
$id [1] "USGS/SRTMGL1_003"
$properties $properties$
system:visualization_0_min
[1] "0.0"$properties$type_name [1] "Image"
$properties$keywords [1] "dem" "elevation" "geophysical" "nasa" "srtm" "topography" "usgs"
$properties$thumb [1] "https://mw1.google.com/ges/dd/images/SRTM90_V4_thumb.png"
$properties$description [1] "
The Shuttle Radar Topography Mission (SRTM, see <a href=\"https://onlinelibrary.wiley.com/doi/10.1029/2005RG000183/full\">Farr\net al. 2007)\ndigital elevation data is an international research effort that\nobtained digital elevation models on a near-global scale. This\nSRTM V3 product (SRTM Plus) is provided by NASA JPL\nat a resolution of 1 arc-second (approximately 30m).
This dataset has undergone a void-filling process using open-source data\n(ASTER GDEM2, GMTED2010, and NED), as opposed to other versions that\ncontain voids or have been void-filled with commercial sources.\nFor more information on the different versions see the\n<a href=\"https://lpdaac.usgs.gov/documents/13/SRTM_Quick_Guide.pdf\">SRTM Quick Guide.
Documentation:
<a href=\"https://lpdaac.usgs.gov/documents/179/SRTM_User_Guide_V3.pdf\">User's Guide
<a href=\"https://lpdaac.usgs.gov/documents/13/SRTM_Quick_Guide.pdf\">General Documentation
<a href=\"https://doi.org/10.1029/2005RG000183\">Algorithm Theoretical Basis Document (ATBD)
Provider: <a href=\"https://cmr.earthdata.nasa.gov/search/concepts/C1000000240-LPDAAC_ECS.html\">NASA / USGS / JPL-Caltech
Bands<table class=\"eecat\">
Elevation
Terms of Use
Unless otherwise noted, images and video on JPL public\nweb sites (public sites ending with a jpl.nasa.gov address) may\nbe used for any purpose without prior permission. For more information\nand exceptions visit the <a href=\"https://www.jpl.nasa.gov/imagepolicy/\">JPL Image Use Policy site.
Suggested citation(s)
"Farr, T.G., Rosen, P.A., Caro, E., Crippen, R., Duren, R., Hensley,\nS., Kobrick, M., Paller, M., Rodriguez, E., Roth, L., Seal, D.,\nShaffer, S., Shimada, J., Umland, J., Werner, M., Oskin, M., Burbank,\nD., and Alsdorf, D.E., 2007, The shuttle radar topography mission:\nReviews of Geophysics, v. 45, no. 2, RG2004, at\n<a href=\"https://doi.org/10.1029/2005RG000183\">https://doi.org/10.1029/2005RG000183.
$properties$source_tags [1] "nasa" "usgs"
$properties$visualization_0_max [1] "6000.0"
$properties$title [1] "NASA SRTM Digital Elevation 30m"
$properties$product_tags [1] "srtm" "elevation" "topography" "dem" "geophysical"
$properties$provider [1] "NASA / USGS / JPL-Caltech"
$properties$visualization_0_min [1] "0.0"
$properties$visualization_0_name [1] "Elevation"
$properties$date_range [1] -1 -1
$properties$
system:visualization_0_gamma
[1] "1.6"$properties$period [1] 0
$properties$
system:visualization_0_bands
[1] "elevation"$properties$provider_url [1] "https://cmr.earthdata.nasa.gov/search/concepts/C1000000240-LPDAAC_ECS.html"
$properties$visualization_0_gamma [1] "1.6"
$properties$sample [1] "https://mw1.google.com/ges/dd/images/SRTM90_V4_sample.png"
$properties$tags [1] "dem" "elevation" "geophysical" "nasa" "srtm" "topography" "usgs"
$properties$
system:visualization_0_max
[1] "6000.0"$properties$
system:visualization_0_name
[1] "Elevation"$properties$
system:asset_size
[1] -1$properties$visualization_0_bands [1] "elevation" Attach your Python (reticulate) configuration:
python: C:/Users/SooyoungKim/AppData/Local/r-miniconda/envs/rgee/python.exe libpython: C:/Users/SooyoungKim/AppData/Local/r-miniconda/envs/rgee/python38.dll pythonhome: C:/Users/SooyoungKim/AppData/Local/r-miniconda/envs/rgee version: 3.8.19 | packaged by conda-forge | (default, Mar 20 2024, 12:38:07) [MSC v.1929 64 bit (AMD64)] Architecture: 64bit numpy: C:/Users/SooyoungKim/AppData/Local/r-miniconda/envs/rgee/Lib/site-packages/numpy numpy_version: 1.24.4 ee: C:\Users\SOOYOU~1\AppData\Local\R-MINI~1\envs\rgee\lib\site-packages\ee__init__.p
NOTE: Python version was forced by RETICULATE_PYTHON
Description
I am trying to extract daily climate variables per administrative area ("ADM2_EN") in the shapefile from ERA5_LAND/DAILY_AGGR image collection between May1 - 30, 2024. The following code used to work perfectly in the past (like until a month ago?) but now it produces an error. It seems to do with the lines within the function ee_extract() that uses create_triplets() on the Image collections. I can't get my head around why this happened. HelP!
What I Did