rsbivand
commented
2 years ago This is not an spdep issue. See https://github.com/r-spatial/sf/issues/1848, and the resolution of never installing from source unless you know how to do it and need to do it to access the development versions of packages, or more recent versions of external software. See especially https://github.com/r-spatial/sf/issues/1848#issuecomment-1004658751 and following responses.
MacosX 12.1 R 4.12 While install spdep 1.2-1, it produced an error: impossible de charger l'objet partagé '/Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/sf.so': dlopen(/Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/sf.so, 0x0006): Library not loaded: /usr/local/opt/gdal/lib/libgdal.29.dylib Referenced from: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/sf.so Reason: tried: '/usr/local/opt/gdal/lib/libgdal.29.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgdal.29.dylib' (no such file), '/Library/Java/JavaVirtualMachines/jdk1.8.0_241.jdk/Contents/Home/jre/lib/server/libgdal.29.dylib' (no such file), '/usr/local/Cellar/gdal/3.4.1/lib/libgdal.29.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgdal.29.dylib' (no such file), '/Library/Java/JavaVirtualMachines/jdk1.8.0_241.jdk/Contents/Home/jre/lib/server/
It tried to use libgdal.29.dylib whereas libgdal.30.dylib is present: √ lib % cd /usr/local/opt/gdal/lib/ √ lib % ls libgdal.30.dylib libgdal.a libgdal.dylib pkgconfig python3.9 √ lib % ls -al total 102952 drwxr-xr-x 7 marcgirondot staff 224 6 jan 09:23 . drwxr-xr-x 10 marcgirondot staff 320 6 jan 08:23 .. -rw-r--r-- 1 marcgirondot staff 18220456 6 jan 08:23 libgdal.30.dylib -r--r--r-- 1 marcgirondot staff 34487256 27 déc 21:30 libgdal.a lrwxr-xr-x 1 marcgirondot staff 16 27 déc 21:30 libgdal.dylib -> libgdal.30.dylib drwxr-xr-x 3 marcgirondot staff 96 6 jan 08:23 pkgconfig drwxr-xr-x 3 marcgirondot staff 96 27 déc 21:30 python3.9
If I try to make a symbolic link from libgdal.30.dylib to libgdal.29.dylib, it does not work either: √ lib % sudo ln -s libgdal.30.dylib libgdal.29.dylib
Erreur : le chargement du package ou de l'espace de noms a échoué pour ‘sf’ in dyn.load(file, DLLpath = DLLpath, ...) : impossible de charger l'objet partagé '/Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/sf.so': dlopen(/Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/sf.so, 0x0006): Symbol not found: __ZN10GDALDriver6CreateEPKciii12GDALDataTypePPc Referenced from: /Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/sf.so Expected in: /usr/local/Cellar/gdal/3.4.1/lib/libgdal.30.dylib
The sf.so shared object is well in place.
cd /Library/Frameworks/R.framework/Versions/4.1/Resources/library/sf/libs/
√ libs % ls sf.so
Any solution ? Thanks Marc Girondot