r-spatial / stars

Spatiotemporal Arrays, Raster and Vector Data Cubes
https://r-spatial.github.io/stars/
Apache License 2.0
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starsdata not available, stars fails revdeps. #684

Open rsbivand opened 6 months ago

rsbivand commented 6 months ago

With GDAL 3.9.0 Beta1 I get:

00check.log

Is this a starsdata (version?) problem? I tried reinstalling but the prime site is down:

> install.packages("starsdata", repos = "http://gis-bigdata.uni-muenster.de/pebesma")
Installing package into '/home/rsb/lib/r_libs'
(as 'lib' is unspecified)
Warning: unable to access index for repository http://gis-bigdata.uni-muenster.de/pebesma/src/contrib:
  cannot open URL 'http://gis-bigdata.uni-muenster.de/pebesma/src/contrib/PACKAGES'
Warning message:
package 'starsdata' is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 
edzer commented 6 months ago
install.packages("starsdata", repos = "http://cran.uni-muenster.de/pebesma")

should do it and you may need to set options(timeout = 600) or so.

rsbivand commented 6 months ago

Trying from http://pebesma.staff.ifgi.de now, still 0.0-1 there. On http://cran.uni-muenster.de/pebesma the version is 0.0-2, so I'll report back when that installs. The example may need a version check on the package, as the No such file or directory suggests that the file used is not present in 0.0-1. The package is also larger, 1058.4 MB download, as against 1037.4 MB for 0.0-1.

rsbivand commented 6 months ago

Of the initial 16 errors on ~ 900 sf and terra packages, most were unprotected suggests, re-running those failures now after installing the suggested packages that should have been conditioned. My R_LIBS now > 4500.

edzer commented 6 months ago

For me it checked clean under gdal 3.9.0beta1.

rsbivand commented 6 months ago

Good, I expect it will for me too, but I had starsdata_0.0-1 installed; with 0.0-2: 00check.log

rsbivand commented 6 months ago

Only remaining issues: https://github.com/ropensci/osmextract/issues/291 https://github.com/PredictiveEcology/SpaDES.core/issues/275

of which only the former may be related to the GDAL version (if it is now checking better than before).

achubaty commented 6 months ago

PredictiveEcology/SpaDES.core#275 has been resolved with v2.0.5 just accepted to CRAN