search

r-spatialecology / gwdg_hpc_guide

Guide How to use the GWDG HPC
https://r-spatialecology.github.io/gwdg_hpc_guide/
2 stars 0 forks source link

Some nice aliases #3

Open mhesselbarth opened 5 years ago

mhesselbarth commented 5 years ago

I started to create a few aliases which might be helpful for the HPC. All aliases are stored in .bash_aliases which is sourced by .bashrc. 

alias jobs_all='squeue --format="%.12i %.12j %.6u %.3P %.3q %.10l %.10M %.5D %.4C %.7m %16R %.8T %.12p"'
alias jobs_med='squeue --partition=medium-fas,medium-fmz --format="%.12i %.12j %.6u %.3P %.3q %.10l %.10M %.5D %.4C %.7m %16R %.8T %.12p"'
alias jobs_fat='squeue --partition=fat-fas,fat-fmz --format="%.12i %.12j %.6u %.3P %.3q %.10l %.10M %.5D %.4C %.7m %16R %.8T %.12p"'
alias jobs_own='squeue -u $USER --format="%.12i %.12j %.6u %.3P %.3q %.10l %.10M %.5D %.4C %.7m %16R %.8T"'
alias jobs_run='squeue -u $USER --states=RUNNING --format="%.12i %.12j %.6u %.3P %.3q %.10l %.10M %.5D %.4C %.7m %16R %.8T"'
alias jobs_pen='squeue -u $USER --states=PENDING --format="%.12i %.12j %.6u %.3P %.3q %.10l %.10M %.5D %.4C %.7m %16R %.8T"'
alias jobs_n='squeue -u $USER --states=RUNNING | wc -l'
alias jobs_kill='scancel -u $USER'
alias jobs_info='sacct -u $USER --units=G --format=JobID,JobName,Partition,QOS,Timelimit,Elapsed,AllocNodes,AllocCPU,ReqMem,MaxRSS,State'
alias fairshare='sshare -U $USER'
alias monitor='htop -u $USER'
alias rm_logs='rm -rf *.log'