Closed Nowosad closed 1 year ago
I wrote a quick, raw code to measure examples' timings (see its application for the terra branch). Maybe it could be useful for someone...:
library(landscapemetrics) library(dplyr) all_examples = dir("man", pattern = ".Rd$", full.names = TRUE) measure_time = function(x){ suppressWarnings({ti = system.time(pkgload::run_example(x, quiet = TRUE))}) df = data.frame(t(as.vector(ti)[1:3])) df$name = x return(df) } my_df = lapply(all_examples, measure_time) my_df = do.call(rbind, my_df) my_df |> arrange(X3) #> X1 X2 X3 name #> 1 0.002 0.000 0.002 man/podlasie_ccilc.Rd #> 2 0.003 0.000 0.003 man/fragstats_patch_augusta_nlcd.Rd #> 3 0.003 0.000 0.003 man/options_landscapemetrics.Rd #> 4 0.003 0.000 0.003 man/rcpp_cell_from_xy.Rd #> 5 0.004 0.000 0.003 man/rcpp_get_nearest_neighbor.Rd #> 6 0.002 0.001 0.003 man/rcpp_xy_from_matrix.Rd #> 7 0.003 0.000 0.004 man/rcpp_create_neighborhood.Rd #> 8 0.004 0.000 0.004 man/fragstats_class_landscape.Rd #> 9 0.004 0.000 0.004 man/fragstats_class_podlasie.Rd #> 10 0.003 0.000 0.004 man/fragstats_landscape_landscape.Rd #> 11 0.003 0.001 0.004 man/fragstats_landscape_podlasie.Rd #> 12 0.003 0.000 0.004 man/fragstats_patch_podlasie.Rd #> 13 0.004 0.000 0.004 man/landscape.Rd #> 14 0.003 0.000 0.004 man/landscapemetrics.Rd #> 15 0.003 0.001 0.004 man/fragstats_class_augusta_nlcd.Rd #> 16 0.003 0.000 0.004 man/fragstats_landscape_augusta_nlcd.Rd #> 17 0.003 0.000 0.004 man/fragstats_patch_landscape.Rd #> 18 0.006 0.001 0.008 man/calculate_lsm.Rd #> 19 0.011 0.000 0.011 man/window_lsm.Rd #> 20 0.014 0.000 0.016 man/list_lsm.Rd #> 21 0.017 0.001 0.018 man/lsm_l_iji.Rd #> 22 0.016 0.001 0.018 man/lsm_l_lsi.Rd #> 23 0.019 0.000 0.020 man/lsm_l_mutinf.Rd #> 24 0.019 0.001 0.020 man/lsm_l_contag.Rd #> 25 0.020 0.000 0.020 man/lsm_c_iji.Rd #> 26 0.021 0.000 0.020 man/lsm_p_area.Rd #> 27 0.022 0.001 0.022 man/lsm_c_mesh.Rd #> 28 0.022 0.000 0.022 man/lsm_c_nlsi.Rd #> 29 0.023 0.000 0.022 man/lsm_l_condent.Rd #> 30 0.021 0.001 0.022 man/lsm_l_relmutinf.Rd #> 31 0.021 0.000 0.022 man/lsm_l_te.Rd #> 32 0.022 0.000 0.022 man/lsm_l_area_sd.Rd #> 33 0.022 0.000 0.022 man/lsm_l_ent.Rd #> 34 0.021 0.000 0.022 man/lsm_l_np.Rd #> 35 0.022 0.001 0.023 man/lsm_c_pladj.Rd #> 36 0.023 0.000 0.023 man/lsm_c_pland.Rd #> 37 0.023 0.000 0.023 man/lsm_l_lpi.Rd #> 38 0.023 0.000 0.023 man/lsm_l_msidi.Rd #> 39 0.024 0.000 0.024 man/lsm_c_split.Rd #> 40 0.024 0.000 0.024 man/lsm_l_rpr.Rd #> 41 0.023 0.001 0.025 man/raster_to_points.Rd #> 42 0.025 0.000 0.025 man/lsm_l_area_cv.Rd #> 43 0.025 0.000 0.026 man/lsm_l_shei.Rd #> 44 0.025 0.000 0.026 man/lsm_c_np.Rd #> 45 0.026 0.000 0.026 man/lsm_l_cohesion.Rd #> 46 0.026 0.000 0.026 man/lsm_l_core_sd.Rd #> 47 0.028 0.000 0.027 man/lsm_l_frac_mn.Rd #> 48 0.027 0.000 0.027 man/lsm_l_pladj.Rd #> 49 0.027 0.000 0.027 man/lsm_l_dcore_sd.Rd #> 50 0.027 0.000 0.027 man/lsm_l_division.Rd #> 51 0.027 0.000 0.027 man/lsm_l_joinent.Rd #> 52 0.027 0.000 0.027 man/lsm_l_msiei.Rd #> 53 0.026 0.001 0.027 man/lsm_l_para_mn.Rd #> 54 0.027 0.000 0.028 man/lsm_l_circle_sd.Rd #> 55 0.027 0.000 0.028 man/lsm_l_mesh.Rd #> 56 0.028 0.000 0.028 man/lsm_l_sidi.Rd #> 57 0.027 0.000 0.028 man/lsm_c_te.Rd #> 58 0.028 0.001 0.029 man/lsm_l_para_sd.Rd #> 59 0.030 0.000 0.029 man/lsm_c_para_cv.Rd #> 60 0.029 0.000 0.029 man/lsm_c_para_sd.Rd #> 61 0.028 0.000 0.029 man/lsm_l_core_mn.Rd #> 62 0.030 0.000 0.030 man/lsm_p_circle.Rd #> 63 0.029 0.000 0.030 man/lsm_p_core.Rd #> 64 0.029 0.001 0.030 man/lsm_p_shape.Rd #> 65 0.029 0.001 0.030 man/lsm_c_lpi.Rd #> 66 0.029 0.000 0.030 man/lsm_c_ndca.Rd #> 67 0.029 0.000 0.030 man/lsm_l_pr.Rd #> 68 0.030 0.000 0.030 man/lsm_p_ncore.Rd #> 69 0.030 0.000 0.031 man/lsm_c_lsi.Rd #> 70 0.031 0.000 0.031 man/lsm_l_frac_cv.Rd #> 71 0.029 0.002 0.031 man/pad_raster.Rd #> 72 0.032 0.000 0.032 man/lsm_l_shape_cv.Rd #> 73 0.033 0.000 0.032 man/lsm_l_siei.Rd #> 74 0.032 0.000 0.032 man/lsm_c_area_cv.Rd #> 75 0.031 0.000 0.032 man/lsm_c_frac_mn.Rd #> 76 0.031 0.001 0.032 man/lsm_c_frac_sd.Rd #> 77 0.032 0.000 0.032 man/lsm_l_dcore_mn.Rd #> 78 0.030 0.001 0.032 man/lsm_l_pd.Rd #> 79 0.030 0.000 0.033 man/landscape_as_list.Rd #> 80 0.031 0.001 0.033 man/lsm_c_core_cv.Rd #> 81 0.033 0.000 0.033 man/lsm_l_cai_cv.Rd #> 82 0.032 0.000 0.033 man/lsm_l_split.Rd #> 83 0.035 0.000 0.034 man/lsm_c_ai.Rd #> 84 0.034 0.000 0.034 man/lsm_c_frac_cv.Rd #> 85 0.034 0.000 0.034 man/lsm_c_shape_mn.Rd #> 86 0.033 0.000 0.034 man/lsm_l_cai_mn.Rd #> 87 0.034 0.000 0.034 man/lsm_l_pafrac.Rd #> 88 0.033 0.000 0.034 man/lsm_l_ed.Rd #> 89 0.034 0.000 0.034 man/proj_info.Rd #> 90 0.029 0.006 0.035 man/matrix_to_raster.Rd #> 91 0.032 0.002 0.035 man/lsm_l_area_mn.Rd #> 92 0.034 0.000 0.035 man/lsm_l_core_cv.Rd #> 93 0.034 0.001 0.035 man/lsm_p_enn.Rd #> 94 0.036 0.000 0.036 man/lsm_c_pd.Rd #> 95 0.037 0.000 0.037 man/lsm_c_para_mn.Rd #> 96 0.037 0.000 0.037 man/lsm_l_ai.Rd #> 97 0.037 0.000 0.037 man/lsm_l_circle_cv.Rd #> 98 0.035 0.001 0.037 man/lsm_l_circle_mn.Rd #> 99 0.037 0.000 0.037 man/lsm_l_dcore_cv.Rd #> 100 0.036 0.000 0.037 man/lsm_l_frac_sd.Rd #> 101 0.036 0.000 0.037 man/lsm_l_gyrate_mn.Rd #> 102 0.037 0.000 0.037 man/lsm_l_ndca.Rd #> 103 0.035 0.001 0.037 man/lsm_l_para_cv.Rd #> 104 0.037 0.000 0.038 man/lsm_l_enn_cv.Rd #> 105 0.036 0.001 0.038 man/lsm_l_tca.Rd #> 106 0.039 0.000 0.039 man/lsm_c_shape_sd.Rd #> 107 0.038 0.001 0.039 man/lsm_l_enn_mn.Rd #> 108 0.039 0.000 0.039 man/lsm_l_shape_sd.Rd #> 109 0.038 0.000 0.039 man/lsm_l_shdi.Rd #> 110 0.040 0.000 0.040 man/lsm_c_shape_cv.Rd #> 111 0.039 0.000 0.040 man/lsm_c_gyrate_sd.Rd #> 112 0.040 0.000 0.040 man/lsm_l_cai_sd.Rd #> 113 0.037 0.000 0.040 man/lsm_p_perim.Rd #> 114 0.040 0.000 0.041 man/lsm_c_core_mn.Rd #> 115 0.041 0.000 0.041 man/lsm_l_dcad.Rd #> 116 0.039 0.001 0.041 man/lsm_p_cai.Rd #> 117 0.041 0.001 0.042 man/lsm_c_tca.Rd #> 118 0.041 0.000 0.042 man/unpad_raster.Rd #> 119 0.043 0.000 0.043 man/lsm_c_gyrate_mn.Rd #> 120 0.042 0.000 0.043 man/lsm_p_frac.Rd #> 121 0.041 0.001 0.043 man/lsm_p_para.Rd #> 122 0.043 0.001 0.044 man/lsm_abbreviations_names.Rd #> 123 0.043 0.001 0.044 man/lsm_l_gyrate_sd.Rd #> 124 0.039 0.000 0.045 man/lsm_c_area_sd.Rd #> 125 0.045 0.000 0.045 man/lsm_l_ta.Rd #> 126 0.045 0.000 0.046 man/get_adjacencies.Rd #> 127 0.043 0.002 0.047 man/lsm_c_core_sd.Rd #> 128 0.046 0.000 0.048 man/lsm_c_dcore_mn.Rd #> 129 0.047 0.000 0.048 man/lsm_l_gyrate_cv.Rd #> 130 0.048 0.000 0.049 man/lsm_c_area_mn.Rd #> 131 0.048 0.001 0.049 man/lsm_c_division.Rd #> 132 0.050 0.000 0.050 man/lsm_c_gyrate_cv.Rd #> 133 0.049 0.000 0.051 man/lsm_l_enn_sd.Rd #> 134 0.051 0.000 0.052 man/lsm_c_pafrac.Rd #> 135 0.051 0.000 0.052 man/lsm_c_ed.Rd #> 136 0.050 0.000 0.054 man/lsm_c_ca.Rd #> 137 0.052 0.001 0.054 man/lsm_l_prd.Rd #> 138 0.054 0.000 0.056 man/lsm_c_dcore_sd.Rd #> 139 0.055 0.001 0.056 man/lsm_c_enn_sd.Rd #> 140 0.058 0.000 0.059 man/get_unique_values.Rd #> 141 0.054 0.000 0.059 man/lsm_p_gyrate.Rd #> 142 0.059 0.000 0.060 man/get_circumscribingcircle.Rd #> 143 0.059 0.001 0.061 man/lsm_c_cai_cv.Rd #> 144 0.061 0.000 0.062 man/lsm_c_circle_mn.Rd #> 145 0.057 0.000 0.063 man/lsm_c_cai_sd.Rd #> 146 0.061 0.001 0.063 man/lsm_c_enn_mn.Rd #> 147 0.061 0.001 0.063 man/lsm_c_circle_sd.Rd #> 148 0.063 0.000 0.065 man/lsm_c_cpland.Rd #> 149 0.061 0.000 0.065 man/lsm_c_dcore_cv.Rd #> 150 0.062 0.002 0.066 man/get_centroids.Rd #> 151 0.065 0.000 0.069 man/lsm_c_cai_mn.Rd #> 152 0.063 0.000 0.070 man/lsm_c_circle_cv.Rd #> 153 0.066 0.000 0.070 man/lsm_c_cohesion.Rd #> 154 0.069 0.000 0.070 man/lsm_c_enn_cv.Rd #> 155 0.062 0.002 0.071 man/lsm_l_shape_mn.Rd #> 156 0.062 0.001 0.079 man/lsm_c_clumpy.Rd #> 157 0.071 0.001 0.086 man/lsm_c_dcad.Rd #> 158 0.088 0.002 0.091 man/get_boundaries.Rd #> 159 0.118 0.000 0.121 man/get_nearestneighbour.Rd #> 160 0.123 0.001 0.131 man/get_patches.Rd #> 161 0.135 0.007 0.144 man/data_info.Rd #> 162 0.147 0.000 0.148 man/spatialize_lsm.Rd #> 163 0.212 0.000 0.213 man/sample_lsm.Rd #> 164 0.226 0.002 0.230 man/show_patches.Rd #> 165 0.432 0.001 0.302 man/show_lsm.Rd #> 166 0.337 0.000 0.339 man/augusta_nlcd.Rd #> 167 0.363 0.000 0.366 man/lsm_l_contig_mn.Rd #> 168 0.373 0.003 0.380 man/lsm_p_contig.Rd #> 169 0.378 0.000 0.381 man/lsm_l_contig_cv.Rd #> 170 0.428 0.000 0.431 man/lsm_l_contig_sd.Rd #> 171 0.406 0.022 0.442 man/check_landscape.Rd #> 172 0.453 0.001 0.483 man/lsm_c_contig_sd.Rd #> 173 0.492 0.007 0.522 man/construct_buffer.Rd #> 174 0.516 0.001 0.555 man/lsm_c_contig_cv.Rd #> 175 0.527 0.000 0.559 man/lsm_c_contig_mn.Rd #> 176 0.921 0.000 0.927 man/show_cores.Rd #> 177 0.914 0.001 0.957 man/extract_lsm.Rd #> 178 2.477 0.031 2.524 man/show_correlation.Rd #> 179 7.211 0.062 7.468 man/calculate_correlation.Rd
I wrote a quick, raw code to measure examples' timings (see its application for the terra branch). Maybe it could be useful for someone...: