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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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snap@gmat has multiple columns for 1 gene #100

Closed hjack123 closed 4 years ago

hjack123 commented 4 years ago

x.sp@gmat has multiple columns for each gene, for plotting it could be misleading. is there a better solution?

r3fang commented 4 years ago

Hi, yeah, that’s because the duplicate gene name in the gene file. The easiest way is to make sure there is no duplicates in the gene.gr http://gene.gr/ object

-- Rongxin Fang, Ren Lab Ludwig Cancer Research Bioinformatics Ph.D. Student University of California, San Diego

On Sep 20, 2019, at 5:45 AM, hjack123 notifications@github.com wrote:

x.sp@gmat has multiple columns for each gene, for plotting it could be misleading. is there a better solution?

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