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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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duplicate barcode #102

Closed hjack123 closed 4 years ago

hjack123 commented 4 years ago

is it possible when i look at x.sp@barcode, there are duplicates? if so what could be the reason?

r3fang commented 4 years ago

That’s because you have merged multiple samples and barcode might be identical. A barcode is defined by both barcode and file slot

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On Sep 24, 2019, at 10:30 AM, hjack123 notifications@github.com wrote:

is it possible when i look at x.sp@barcode, there are duplicates? if so what could be the reason?

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hjack123 commented 4 years ago

Thank you very much!!

On Tue, Sep 24, 2019 at 12:35 PM Rongxin Fang notifications@github.com wrote:

That’s because you have merged multiple samples and barcode might be identical. A barcode is defined by both barcode and file slot

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On Sep 24, 2019, at 10:30 AM, hjack123 notifications@github.com wrote:

is it possible when i look at x.sp@barcode, there are duplicates? if so what could be the reason?

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hejing3283 commented 4 years ago

In this cases how could you link the object with metadata?