I'm running into an issue with the PBMC vignette. At:
DARs = findDAR(
obj=x.sp,
input.mat="pmat",
cluster.pos="CD14+ Monocytes",
cluster.neg.method="knn",
test.method="exactTest",
bcv=0.4, #0.4 for human, 0.1 for mouse
seed.use=10
);
I get a "cluster.pos does not exist in cluster" error.
I looked into x.sp's structure and it seems that cluster.pos are still numeric. I can get round this issue by defining cluster.pos="1", but it seems there's a step missing where clusters are relabelled in x.sp. Sorry if I've missed something obvious, but could you advise?
Hi Rongxin,
I'm running into an issue with the PBMC vignette. At:
DARs = findDAR( obj=x.sp, input.mat="pmat", cluster.pos="CD14+ Monocytes", cluster.neg.method="knn", test.method="exactTest", bcv=0.4, #0.4 for human, 0.1 for mouse seed.use=10 );
I get a "cluster.pos does not exist in cluster" error.
I looked into x.sp's structure and it seems that cluster.pos are still numeric. I can get round this issue by defining cluster.pos="1", but it seems there's a step missing where clusters are relabelled in x.sp. Sorry if I've missed something obvious, but could you advise?
Thanks again for your work on this pipeline. (: