);
and I am getting the following error:
Epoch: checking input parameters ...
Error in runMACS(obj = x.sp[which(x.sp@cluster == 1), ], output.prefix = "atac_v1_adult_brain_fresh_5k.1", :
path.to.macs does not exist
when I go to the dir in which MACS and snaptools are installed everything seems to work fine:
Hi, I am running
when I go to the dir in which MACS and snaptools are installed everything seems to work fine:
software ulitzenburger$ macs2 -h usage: macs2 [-h] [--version] {callpeak,bdgpeakcall,bdgbroadcall,bdgcmp,bdgopt,cmbreps,bdgdiff,filterdup,predictd,pileup,randsample,refinepeak} ...
macs2 -- Model-based Analysis for ChIP-Sequencing ...
and software ulitzenburger$ snaptools usage: snaptools [-h] ...
Program: snaptools (A module for working with snap files in Python) Version: 1.4.8 .....
any idea why? Thanks Ulli