when I run demo.sp = createSnap(file.name, sample="demo", do.par=FALSE), i got the warning information :
Epoch: reading the barcode session ...
[1] "Warning @readSnap: 'BD/name' not found in /nethome/gjx/miniconda2/lib/R/library/SnapATAC/extdata/demo.snap"
[1] "Warning @readSnap: 'BD/name' not found in /nethome/gjx/miniconda2/lib/R/library/SnapATAC/extdata/demo.snap"
Error in data.frame(barcode, TN, UM, PP, UQ, CM) :
arguments imply differing number of rows: 0, 171
In addition: Warning messages:
1: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
2: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
3: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
4: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
5: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
6: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
7: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) :
An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
r3fang
commented
4 years ago
when I run demo.sp = createSnap(file.name, sample="demo", do.par=FALSE), i got the warning information : Epoch: reading the barcode session ... [1] "Warning @readSnap: 'BD/name' not found in /nethome/gjx/miniconda2/lib/R/library/SnapATAC/extdata/demo.snap" [1] "Warning @readSnap: 'BD/name' not found in /nethome/gjx/miniconda2/lib/R/library/SnapATAC/extdata/demo.snap" Error in data.frame(barcode, TN, UM, PP, UQ, CM) : arguments imply differing number of rows: 0, 171 In addition: Warning messages: 1: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles. 2: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles. 3: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles. 4: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles. 5: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles. 6: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles. 7: In h5checktypeOrOpenLoc(file, readonly = TRUE, native = native) : An open HDF5 file handle exists. If the file has changed on disk meanwhile, the function may not work properly. Run 'h5closeAll()' to close all open HDF5 object handles.
My R version id R.3.5