)
Epoch: checking input parameters ...
Epoch: extracting fragments from each snap files ...
sh: 1: /home/martinlab/.conda/envs/snapATAC/lib/python2.7/site-packages/snaptools/: Permission denied
cat: /tmp/RtmprHDfTz/file50929778f62.bed.gz: No such file or directory
INFO @ Tue, 26 Nov 2019 23:38:19:
Larger dataset will be scaled towards smaller dataset.
Range for calculating regional lambda is: 10000 bps
Broad region calling is off
Searching for subpeak summits is on
MACS will save fragment pileup signal per million reads
INFO @ Tue, 26 Nov 2019 23:38:19: #1 read tag files...
INFO @ Tue, 26 Nov 2019 23:38:19: #1 read treatment tags...
Exception ZeroDivisionError: 'integer division or modulo by zero' in 'MACS2.IO.Parser.GenericParser.tsize' ignored
INFO @ Tue, 26 Nov 2019 23:38:19: #1 tag size is determined as 0 bps
INFO @ Tue, 26 Nov 2019 23:38:19: #1 tag size = 0
INFO @ Tue, 26 Nov 2019 23:38:19: #1 total tags in treatment: 0
INFO @ Tue, 26 Nov 2019 23:38:19: #1 user defined the maximum tags...
INFO @ Tue, 26 Nov 2019 23:38:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s)
INFO @ Tue, 26 Nov 2019 23:38:19: #1 tags after filtering in treatment: 0
Traceback (most recent call last):
File "/usr/bin/macs2", line 614, in
main()
File "/usr/bin/macs2", line 56, in main
run( args )
File "/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py", line 109, in run
info("#1 Redundant rate of treatment: %.2f", float(t0 - t1) / t0)
ZeroDivisionError: float division by zero
Error in runMACS(obj = EC1x.sp[which(EC1x.sp@cluster == 1), ], output.prefix = "Endo_1.1", :
'MACS' call failed
Hello,
Got through to runMACS and then came up with the following error:
INFO @ Tue, 26 Nov 2019 23:38:19: #1 read tag files... INFO @ Tue, 26 Nov 2019 23:38:19: #1 read treatment tags... Exception ZeroDivisionError: 'integer division or modulo by zero' in 'MACS2.IO.Parser.GenericParser.tsize' ignored INFO @ Tue, 26 Nov 2019 23:38:19: #1 tag size is determined as 0 bps INFO @ Tue, 26 Nov 2019 23:38:19: #1 tag size = 0 INFO @ Tue, 26 Nov 2019 23:38:19: #1 total tags in treatment: 0 INFO @ Tue, 26 Nov 2019 23:38:19: #1 user defined the maximum tags... INFO @ Tue, 26 Nov 2019 23:38:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 26 Nov 2019 23:38:19: #1 tags after filtering in treatment: 0 Traceback (most recent call last): File "/usr/bin/macs2", line 614, in
main()
File "/usr/bin/macs2", line 56, in main
run( args )
File "/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py", line 109, in run
info("#1 Redundant rate of treatment: %.2f", float(t0 - t1) / t0)
ZeroDivisionError: float division by zero
Error in runMACS(obj = EC1x.sp[which(EC1x.sp@cluster == 1), ], output.prefix = "Endo_1.1", :
'MACS' call failed
Any help would be most appreciated.
Best