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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
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about Integrative analysis of scATAC-seq and scRNA-seq #132

Open ahmedabbas81 opened 4 years ago

ahmedabbas81 commented 4 years ago

Dear all,

What is the corresponding table in case of mouse genome in this command?

genes.df = read.table("gencode.v19.annotation.gene.bed");

Thanks

r3fang commented 4 years ago

hello,

Please find the gene table here: https://www.dropbox.com/sh/pkyloalmvrcw7fg/AAAyMUTFS-569pHJl5DXA2RGa?dl=0

hg19 - gencode.v19.annotation.gene.bed mm10 - gencode.vM16.gene.bed