gene-enhancer pairs visualization tool

r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

GNU General Public License v3.0

301 stars 125 forks source link

gene-enhancer pairs visualization tool #138

Open qingnanl opened 4 years ago

qingnanl commented 4 years ago

Dear developer (Rongxin),

I am impressed by the package that it can compute the peak-to-gene link. You mentioned in the tutorial that '# convert the pair to genome browser arc plot format'. What is the visualization tool you used?

Many thanks,

qingnanl

r3fang commented 4 years ago

I used UW Genome browser to visualize these interactions. https://epigenomegateway.wustl.edu/