Open esh81 opened 4 years ago
I also have the same needs. However after reviewing the code of https://github.com/r3fang/SnapATAC/blob/master/R/findDARs.R, it is just simple usage of DGEList
from package edgeR
, therefore I'll try to modify it to suit for samples
Hi,
Is there any way to find DARs between different samples (ie, compare DARs between different samples as opposed to different clusters)? I've read in my different samples into one snap file and called peaks for each sample, but can't figure out how to get the DARs because there is a cluster.pos option but not a sample option in the findDAR step.
Thank you!