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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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narrowPeak file headers missing #153

Open dskhanirfan opened 4 years ago

dskhanirfan commented 4 years ago

The column headers are absent in the generated files, Can you explain what are the column headers in the following files atac_v1_adult_brain_fresh_5k.9_peaks.narrowPeak atac_v1_adult_brain_fresh_5k.1_treat_pileup.bdg

head atac_v1_adult_brain_fresh_5k.9_peaks.narrowPeak | column -t b'chr1' 3121544 3121781 atac_v1_adult_brain_fresh_5k.9_peak_1 59 . 5.83333 8.67112 5.92598 139 head atac_v1_adult_brain_fresh_5k.1_treat_pileup.bdg | column -t

b'chr1'  0        3001206  0.00000
b'chr1'  3001206  3001279  0.47410
b'chr1'  3001279  3006326  0.00000
b'chr1'  3006326  3006399  0.47410
b'chr1'  3006399  3010815  0.00000