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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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how to check if snap file is complete #155

Open hjack123 opened 4 years ago

hjack123 commented 4 years ago

just realized one sample only has chr1-9 and not the rest... is there a way after making the snap file, we can check if all chromsomes/bam file is captured? hdf5 reader? thanks!!

hjack123 commented 4 years ago

or when making the bmat, can it report how many chromosomes were there?

i have one sample was empry for half of bmat, but i didn't know at the time