Open tlsteph opened 4 years ago
I have the same issue. In an earlier reply @r3fang replied that it is a Python issue (https://github.com/r3fang/SnapATAC/issues/80), but I have tried in both python 3 and 2.7, but it does not help. Before it crashes it does outputs:
100000 tags, 0.834897994995 seconds
200000 tags, 1.64896893501 seconds
300000 tags, 2.46505284309 seconds
400000 tags, 3.28171300888 seconds
500000 tags, 4.09783291817 seconds
600000 tags, 4.91421294212 seconds
700000 tags, 5.72919988632 seconds
800000 tags, 6.54903578758 seconds
Traceback (most recent call last):
.... (same error)
Did you find a solution?
same error
406700000 tags, 4080.93846822 seconds
406800000 tags, 4081.93570709 seconds
406900000 tags, 4082.930547 seconds
407000000 tags, 4083.92685223 seconds
407100000 tags, 4084.92249608 seconds
407200000 tags, 4085.91857719 seconds
407300000 tags, 4086.91163301 seconds
407400000 tags, 4087.90384507 seconds
Traceback (most recent call last):
File "/usr/local/bin/snaptools", line 38, in
Hi, I`ve been trying to create a .snap file from a fragments.bed file and running:
I get the following error:
Is it an issue of a dependency not being properly installed? Or something else? Any help would be really appreciated! Thanks!