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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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error: cell-by-peak matrix #179

Open Qingrun opened 4 years ago

Qingrun commented 4 years ago

I have a problem with Step 12. Create a cell-by-peak matrix. I kept on getting problem like the following: ***** WARNING: File /tmp/tmplgxoCq has inconsistent naming convention for record: chr4 101347707 101347797 AAACGAAAGACACGGT-1

I searched for the previous solution like this one: https://github.com/r3fang/SnapATAC/issues/154.

I tried to install snaptools, python/2.7 into a new miniconda environment , but still didn't work. Maybe I missed installing the right dependencies. May I ask how to solve this problem?

Thanks.