r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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how to get the DE peaks from combined object #192

Open songeric1107 opened 4 years ago

songeric1107 commented 4 years ago

I am trying to combine WT and mutant object together and get the DE peaks by comparing wt and mutant.

do you have a good example for that?

I am trying to use findDAR function to achieve that, but I have problem to create the pmat file.