Hi, I noticed when I was adding the PMAT via fixed narrowpeak files (turned b'chr1' turn chr1) there were a bit of issues so I looked at the function and noticed that you initially add the decoded (e.g. chr1) for chromosomes but then rewrite it with then undecided (e.g. b'chr1') version of the chromosomes/contigs, as shown below
Is there any reason why, if not would it be possible to change it to
_chroms = [item.decode() for item in f["FM"]["fragChrom"][barcode_pos_list]];
in the next update to make it clearer?
Thanks!
Hi, I noticed when I was adding the PMAT via fixed narrowpeak files (turned b'chr1' turn chr1) there were a bit of issues so I looked at the function and noticed that you initially add the decoded (e.g. chr1) for chromosomes but then rewrite it with then undecided (e.g. b'chr1') version of the chromosomes/contigs, as shown below
Is there any reason why, if not would it be possible to change it to
_chroms = [item.decode() for item in f["FM"]["fragChrom"][barcode_pos_list]];in the next update to make it clearer? Thanks!