r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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error in runDiffusionMaps #219

Open tianchen2019 opened 3 years ago

tianchen2019 commented 3 years ago

when i run runDiffusionMaps, the error appeared: Error in .local(x, y, ...) : Cholmod error 'problem too large' at file ../Core/cholmod_sparse.c, line 92 Calls: runDiffusionMaps ... calJaccard -> -> -> .local -> .Call the number of cells is 140000, the bin size is 5000, I guess it's just too many cells. How many cells can SNAPATAC allow? image