Drosophila melanogaster correspondence for mouse "gencode.vM16.gene.bed" to run Gene-based annotation

r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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Drosophila melanogaster correspondence for mouse "gencode.vM16.gene.bed" to run Gene-based annotation #221

Open strawberry789 opened 3 years ago

strawberry789 commented 3 years ago

Hello,

I'm trying to use snapATAC to analyze my drosophila single-cell ATAC data. Where would I find the drosophila version for the mouse gencode.vM16.gene.bed? What other drosophila-specific databases/files would I need? Is Homer drosophila data available? Is there a drosophila correspondence for the file "findMotifsGenome.pl"?

Thank you!

Joyce

qingzengLi commented 2 years ago

Hi, I have the same problem as you, have you found a solution to generate a new encode gene.bed file ? Or do you know what information is in the bed file?