snaptools align-paired-end error

[ZHIDIHUAYUAN]

Hi, when I ran the following command: /amber/users/myzhou/anaconda3/envs/ATAC/bin/snaptools align-paired-end \ --input-reference=hap1.fa \ --input-fastq1=sample1_all_L001_R1_001.dex.fastq.gz \ --input-fastq2=sample1_all_L001_R3_001.dex.fastq.gz \ --output-bam=sample1_hap1.bam \ --aligner=bwa \ --path-to-aligner=/anaconda3/envs/ATAC/bin \ --read-fastq-command=zcat \ --min-cov=0 \ --num-threads=40 \ --if-sort=True \ --tmp-folder=./ \ --overwrite=TRUE I got the following : I don't know where I was wrong. Please help me.

[t-and]

Hi @ZHIDIHUAYUAN , did you manage to resolve this? I am receiving the same error.