r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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'CEMBA180305_2B.snap' no snap object in "Integrative Analysis of 10X and snATAC" #257

Open aminbensaad opened 6 months ago

aminbensaad commented 6 months ago

Dear @r3fang @yingyuan830, I am in urgent need of the tutorial data above and currently cannot manage to get it to run with the provided data as it seems to be corrupted.

The downloaded version from here does not seem to be in the proper state yet for processing and after adding the bins (1000, 5000, 10000) I keep running into and 'rbind' error (not more info) right after.

Do you mind providing the uncorrupted data and/or the processing steps necessary to get the 'raw' version into the correct state for the tutorial?