Hello! I am very interested in running chromVAR with my single-cell data, and clicked on the news link referencing it (https://github.com/r3fang/SnapATAC/tree/master/examples/10X_P50), but this example has no mention of chromVAR. Could you help point me in the right direction for this analysis? What parks of the snap object are required?
Hello! I am very interested in running chromVAR with my single-cell data, and clicked on the news link referencing it (https://github.com/r3fang/SnapATAC/tree/master/examples/10X_P50), but this example has no mention of chromVAR. Could you help point me in the right direction for this analysis? What parks of the snap object are required?
Thanks!