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r3fang / SnapATAC

Analysis Pipeline for Single Cell ATAC-seq
GNU General Public License v3.0
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runCluster silencer error. #6

Closed shawnzhangyx closed 5 years ago

shawnzhangyx commented 5 years ago

Hi Rongxin,

I tried to runCluster with the path to the snaptools, however, it failed to cluster without reporting any error. On the other hand, the R internal igraph cluster method worked (without giving it the path to snaptools). Could you help me figure out why? I can send you the link to RData file over Slack if you need it.

r3fang commented 5 years ago

can you use igraph for now? I am working on a new version, this function is out of date now

shawnzhangyx commented 5 years ago

Sure. Thanks for the comment!